Variant report

Variant	rs56956534
Chromosome Location	chr8:60511153-60511154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57076954	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57775428	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58767989	1.00[AMR][1000 genomes]
rs61007460	1.00[AMR][1000 genomes]
rs6996210	1.00[AMR][1000 genomes]
rs7008888	1.00[AMR][1000 genomes]
rs7009016	1.00[AMR][1000 genomes]
rs7013015	1.00[AMR][1000 genomes]
rs7013170	1.00[AMR][1000 genomes]
rs7013484	1.00[AMR][1000 genomes]
rs7014445	1.00[AMR][1000 genomes]
rs73245943	1.00[AMR][1000 genomes]
rs73245946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245948	1.00[AMR][1000 genomes]
rs73245951	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245971	1.00[AMR][1000 genomes]
rs73245974	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245978	1.00[AMR][1000 genomes]
rs73245993	1.00[AMR][1000 genomes]
rs73245999	1.00[AMR][1000 genomes]
rs7813801	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029441	chr8:60099776-60539141	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539629	chr8:60099776-60539141	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831330	chr8:60270398-60514078	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60506000-60511800	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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