Variant report

Variant	rs73245978
Chromosome Location	chr8:60562790-60562791
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs56956534	1.00[AMR][1000 genomes]
rs57076954	1.00[AMR][1000 genomes]
rs57775428	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58767989	1.00[AMR][1000 genomes]
rs61007460	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6996210	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7008888	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7009016	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7013015	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7013170	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7013484	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7014445	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245943	1.00[AMR][1000 genomes]
rs73245946	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245948	1.00[AMR][1000 genomes]
rs73245951	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245971	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245974	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245993	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73245999	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7813801	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030564	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv539630	chr8:60445016-60752655	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60561200-60563000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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