Variant report

Variant	rs56957947
Chromosome Location	chr6:33327495-33327496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33283911..33285602-chr6:33327054..33329692,2	K562	blood:
2	chr6:33238564..33240970-chr6:33325772..33328532,3	MCF-7	breast:
3	chr6:33239559..33241561-chr6:33327024..33329946,2	K562	blood:
4	chr6:33325008..33327752-chr6:33358204..33360429,2	K562	blood:
5	chr6:33324046..33327931-chr6:33328359..33332196,5	K562	blood:
6	chr6:33266017..33267860-chr6:33325857..33328088,3	MCF-7	breast:
7	chr6:33264242..33266619-chr6:33325685..33327636,2	MCF-7	breast:
8	chr6:33238627..33241561-chr6:33327024..33329946,3	K562	blood:
9	chr6:33278819..33285671-chr6:33324194..33330069,12	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000236104	Chromatin interaction
ENSG00000231925	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000231500	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs57745261	0.86[AFR][1000 genomes]
rs58287097	0.89[AFR][1000 genomes]
rs59142568	0.87[AFR][1000 genomes]
rs59368071	0.87[AFR][1000 genomes]
rs59507163	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60023810	1.00[AMR][1000 genomes]
rs6901048	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6906693	0.87[AFR][1000 genomes]
rs6908509	0.87[AFR][1000 genomes]
rs6920095	0.87[AFR][1000 genomes]
rs73402305	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73416054	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33322000-33332200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:33324400-33332600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:33324600-33340200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:33325800-33327800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:33326200-33329600	Weak transcription	Stomach Mucosa	stomach
6	chr6:33326400-33327600	Weak transcription	K562	blood
7	chr6:33327000-33327600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:33327200-33327800	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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