Variant report

Variant	rs59142568
Chromosome Location	chr6:33300977-33300978
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs3173275	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56957947	0.87[AFR][1000 genomes]
rs57582515	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57745261	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58883992	0.81[AFR][1000 genomes]
rs59097151	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59368071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59531270	1.00[AMR][1000 genomes]
rs60170976	0.81[AFR][1000 genomes]
rs6906693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931141	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410003	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410010	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410043	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410049	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73412030	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
3	nsv969386	chr6:33297665-33325116	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33291800-33317400	Weak transcription	Right Atrium	heart
2	chr6:33292800-33301800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:33297000-33301200	Enhancers	Primary B cells from cord blood	blood
4	chr6:33300400-33309800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr6:33300600-33302200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:33300600-33303000	Weak transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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