Variant report

Variant	rs6931141
Chromosome Location	chr6:33279337-33279338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33278991..33280553-chr6:33357781..33360462,2	MCF-7	breast:
2	chr6:33259755..33275794-chr6:33276314..33291745,68	MCF-7	breast:
3	chr6:33279220..33282454-chr6:33357653..33360404,5	MCF-7	breast:
4	chr6:33256218..33259091-chr6:33279064..33284854,6	MCF-7	breast:
5	chr6:33279097..33283546-chr6:33386045..33390564,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197283	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000112514	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000204220	Chromatin interaction
ENSG00000227057	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs3173275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57582515	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57745261	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58759132	0.93[AFR][1000 genomes]
rs58883992	0.94[AFR][1000 genomes]
rs59097151	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59142568	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59368071	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59531270	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60170976	0.94[AFR][1000 genomes]
rs60813085	0.84[AFR][1000 genomes]
rs6906693	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908509	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920095	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408048	0.84[AFR][1000 genomes]
rs73408053	0.86[AFR][1000 genomes]
rs73408061	0.92[AFR][1000 genomes]
rs73408065	0.92[AFR][1000 genomes]
rs73408067	0.92[AFR][1000 genomes]
rs73410003	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410010	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410043	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410049	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33268200-33279400	Strong transcription	Fetal Intestine Small	intestine
2	chr6:33268200-33279600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:33268200-33279800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:33268200-33279800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr6:33268200-33279800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33268200-33279800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr6:33268200-33279800	Weak transcription	Right Atrium	heart
8	chr6:33268200-33279800	Weak transcription	HSMMtube	muscle
9	chr6:33268400-33279600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr6:33268400-33279800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:33268600-33279600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:33268600-33279800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:33268600-33279800	Weak transcription	HSMM	muscle
14	chr6:33268800-33279400	Strong transcription	Fetal Thymus	thymus
15	chr6:33268800-33279600	Weak transcription	NH-A	brain
16	chr6:33269000-33279800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:33269000-33279800	Weak transcription	Fetal Heart	heart
18	chr6:33269000-33279800	Strong transcription	Fetal Stomach	stomach
19	chr6:33269200-33279400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr6:33269200-33279600	Weak transcription	Fetal Brain Male	brain
21	chr6:33269600-33279400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr6:33269800-33279400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr6:33270000-33279800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:33271600-33279400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:33271800-33279600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr6:33272200-33279600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:33272200-33279800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr6:33272600-33279600	Weak transcription	Fetal Lung	lung
29	chr6:33272600-33280000	Weak transcription	Brain Germinal Matrix	brain
30	chr6:33272800-33279600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:33272800-33279600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:33272800-33279800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:33273000-33279600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:33273000-33279600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr6:33273000-33279800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:33273000-33279800	Weak transcription	HUVEC	blood vessel
37	chr6:33273000-33280000	Weak transcription	Fetal Brain Female	brain
38	chr6:33273000-33280000	Weak transcription	Psoas Muscle	Psoas
39	chr6:33273200-33280000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr6:33273200-33280200	Weak transcription	Aorta	Aorta
41	chr6:33273400-33279800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:33273400-33279800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:33273400-33279800	Weak transcription	Right Ventricle	heart
44	chr6:33273400-33280000	Weak transcription	Gastric	stomach
45	chr6:33273600-33280200	Weak transcription	Ovary	ovary
46	chr6:33273800-33279400	Weak transcription	HepG2	liver
47	chr6:33273800-33279600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:33273800-33279800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr6:33273800-33280000	Weak transcription	Colonic Mucosa	Colon
50	chr6:33273800-33280200	Weak transcription	Left Ventricle	heart

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