Variant report

Variant	rs73410043
Chromosome Location	chr6:33280661-33280662
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33167013..33169892-chr6:33280381..33282720,3	MCF-7	breast:
2	chr6:33238090..33243099-chr6:33279379..33286881,12	MCF-7	breast:
3	chr6:33280452..33282497-chr6:33377188..33378997,2	MCF-7	breast:
4	chr6:26198160..26200179-chr6:33280182..33281976,2	MCF-7	breast:
5	chr6:32937349..32940364-chr6:33280292..33282198,3	MCF-7	breast:
6	chr6:33259755..33275794-chr6:33276314..33291745,68	MCF-7	breast:
7	chr6:33247489..33248030-chr6:33280167..33280902,2	MCF-7	breast:
8	chr6:33215997..33218425-chr6:33280174..33283199,3	K562	blood:
9	chr6:32936236..32938607-chr6:33279588..33282413,3	MCF-7	breast:
10	chr6:33279220..33282454-chr6:33357653..33360404,5	MCF-7	breast:
11	chr6:33163462..33166749-chr6:33279583..33282083,3	K562	blood:
12	chr6:33256218..33259091-chr6:33279064..33284854,6	MCF-7	breast:
13	chr17:7382482..7385239-chr6:33280198..33282715,2	MCF-7	breast:
14	chr6:33279097..33283546-chr6:33386045..33390564,5	MCF-7	breast:
15	chr6:33243260..33246626-chr6:33279357..33283682,8	MCF-7	breast:
16	chr6:33279489..33293095-chr6:33375317..33398824,56	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235863	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000174282	Chromatin interaction
ENSG00000112473	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000202441	Chromatin interaction
ENSG00000197409	Chromatin interaction
ENSG00000197283	Chromatin interaction
ENSG00000112514	Chromatin interaction
ENSG00000204231	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000112511	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000227057	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000259224	Chromatin interaction
ENSG00000232940	Chromatin interaction
ENSG00000237441	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000204220	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000237649	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs3173275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57582515	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57745261	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58759132	0.90[AFR][1000 genomes]
rs58883992	0.91[AFR][1000 genomes]
rs59097151	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59142568	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59368071	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59531270	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60170976	0.91[AFR][1000 genomes]
rs60813085	0.82[AFR][1000 genomes]
rs6906693	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908509	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920095	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931141	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408048	0.82[AFR][1000 genomes]
rs73408053	0.84[AFR][1000 genomes]
rs73408061	0.90[AFR][1000 genomes]
rs73408065	0.90[AFR][1000 genomes]
rs73408067	0.90[AFR][1000 genomes]
rs73410003	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410010	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410049	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33279600-33280800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:33279600-33282400	Active TSS	NHDF-Ad	bronchial
3	chr6:33279800-33280800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr6:33279800-33280800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:33279800-33280800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:33279800-33280800	Flanking Active TSS	Liver	Liver
7	chr6:33279800-33281200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:33279800-33281200	Flanking Active TSS	Brain Hippocampus Middle	brain
9	chr6:33279800-33281400	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr6:33279800-33281400	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr6:33279800-33281400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
12	chr6:33279800-33282400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:33279800-33282600	Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr6:33279800-33282600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr6:33279800-33282800	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr6:33279800-33283000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr6:33279800-33283200	Active TSS	H9 Cell Line	embryonic stem cell
18	chr6:33280000-33280800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
19	chr6:33280000-33281000	Flanking Active TSS	Brain Substantia Nigra	brain
20	chr6:33280000-33281000	Flanking Active TSS	HSMM	muscle
21	chr6:33280000-33281200	Flanking Active TSS	Right Ventricle	heart
22	chr6:33280000-33281400	Flanking Active TSS	Brain Germinal Matrix	brain
23	chr6:33280000-33281800	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
24	chr6:33280000-33282000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:33280000-33282000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
26	chr6:33280000-33282200	Active TSS	Small Intestine	intestine
27	chr6:33280000-33282600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:33280000-33283000	Active TSS	HUES64 Cell Line	embryonic stem cell
29	chr6:33280000-33283200	Active TSS	iPS-18 Cell Line	embryonic stem cell
30	chr6:33280200-33281000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:33280200-33281000	Flanking Active TSS	Fetal Lung	lung
32	chr6:33280200-33281200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr6:33280200-33281200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:33280200-33281200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr6:33280200-33281200	Flanking Active TSS	Fetal Brain Female	brain
36	chr6:33280200-33281400	Flanking Active TSS	Fetal Muscle Trunk	muscle
37	chr6:33280200-33282200	Active TSS	iPS-20b Cell Line	embryonic stem cell
38	chr6:33280200-33282200	Active TSS	A549	lung
39	chr6:33280200-33282400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:33280200-33282400	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr6:33280200-33282400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
42	chr6:33280200-33282400	Active TSS	Fetal Kidney	kidney
43	chr6:33280200-33282400	Active TSS	Lung	lung
44	chr6:33280200-33282400	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr6:33280200-33282400	Active TSS	Stomach Mucosa	stomach
46	chr6:33280200-33282400	Active TSS	GM12878-XiMat	blood
47	chr6:33280200-33282400	Active TSS	NHLF	lung
48	chr6:33280200-33282600	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr6:33280200-33282600	Active TSS	Ovary	ovary
50	chr6:33280200-33283200	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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