Variant report

Variant	rs73408065
Chromosome Location	chr6:33224663-33224664
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33217117..33219742-chr6:33222454..33224666,3	K562	blood:
2	chr6:33215055..33218852-chr6:33220209..33224785,5	MCF-7	breast:
3	chr6:33223992..33225518-chr6:33231313..33234297,2	MCF-7	breast:
4	chr6:33224298..33226172-chr6:33235633..33237854,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000223501	Chromatin interaction
ENSG00000232940	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3173275	0.92[AFR][1000 genomes]
rs57582515	0.94[AFR][1000 genomes]
rs58759132	0.94[AFR][1000 genomes]
rs58883992	0.99[AFR][1000 genomes]
rs59097151	0.95[AFR][1000 genomes]
rs59531270	0.94[AFR][1000 genomes]
rs60170976	0.99[AFR][1000 genomes]
rs60813085	0.89[AFR][1000 genomes]
rs6931141	0.92[AFR][1000 genomes]
rs73408048	0.89[AFR][1000 genomes]
rs73408053	0.91[AFR][1000 genomes]
rs73408061	0.98[AFR][1000 genomes]
rs73408067	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410003	0.97[AFR][1000 genomes]
rs73410010	0.97[AFR][1000 genomes]
rs73410043	0.90[AFR][1000 genomes]
rs73410049	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462893	chr6:33142539-33256471	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv602830	chr6:33142539-33256471	Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
4	nsv462894	chr6:33174783-33254665	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
5	nsv602831	chr6:33174783-33254665	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33217400-33234200	Weak transcription	Small Intestine	intestine
2	chr6:33217800-33231200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:33217800-33231200	Weak transcription	Aorta	Aorta
4	chr6:33217800-33231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33218000-33224800	Weak transcription	Lung	lung
6	chr6:33218000-33225000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:33218000-33225000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:33218000-33226400	Weak transcription	Spleen	Spleen
9	chr6:33218000-33226600	Weak transcription	Ovary	ovary
10	chr6:33218000-33231200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:33218000-33231200	Weak transcription	Gastric	stomach
12	chr6:33218000-33231400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:33218000-33231600	Weak transcription	Psoas Muscle	Psoas
14	chr6:33218000-33235400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:33218000-33238800	Weak transcription	Right Atrium	heart
16	chr6:33218200-33226600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr6:33218200-33227200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr6:33218200-33231800	Weak transcription	Fetal Brain Male	brain
19	chr6:33218400-33226200	Weak transcription	Primary B cells from cord blood	blood
20	chr6:33218400-33226600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr6:33218400-33231200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr6:33218400-33231400	Weak transcription	Stomach Mucosa	stomach
23	chr6:33218400-33234200	Weak transcription	Fetal Heart	heart
24	chr6:33218600-33225600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:33218600-33226400	Weak transcription	Left Ventricle	heart
26	chr6:33218600-33226600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr6:33218600-33226800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr6:33218600-33231200	Weak transcription	A549	lung
29	chr6:33218600-33231400	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr6:33218600-33231600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr6:33218600-33233200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:33218600-33234200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr6:33218800-33225200	Weak transcription	Pancreas	Pancrea
34	chr6:33218800-33226600	Weak transcription	Brain Angular Gyrus	brain
35	chr6:33218800-33226600	Weak transcription	Brain Hippocampus Middle	brain
36	chr6:33218800-33226800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr6:33218800-33226800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:33218800-33228000	Weak transcription	Fetal Brain Female	brain
39	chr6:33218800-33228000	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr6:33218800-33228000	Weak transcription	Hela-S3	cervix
41	chr6:33218800-33230600	Weak transcription	Right Ventricle	heart
42	chr6:33218800-33232000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr6:33218800-33235400	Weak transcription	HUVEC	blood vessel
44	chr6:33219400-33224800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:33219600-33224800	Weak transcription	Brain Germinal Matrix	brain
46	chr6:33219600-33227400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:33219800-33224800	Weak transcription	Monocytes-CD14+_RO01746	blood
48	chr6:33219800-33225000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:33219800-33225000	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:33219800-33225000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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