Variant report

Variant	rs73408061
Chromosome Location	chr6:33220793-33220794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33220222..33222202-chr6:33228166..33229877,2	MCF-7	breast:
2	chr6:33172848..33181857-chr6:33213902..33220839,20	K562	blood:
3	chr6:33220061..33221744-chr6:33244874..33247041,2	MCF-7	breast:
4	chr6:33219097..33221365-chr6:33427098..33429483,3	K562	blood:
5	chr6:33215055..33218852-chr6:33220209..33224785,5	MCF-7	breast:
6	chr6:33164335..33170248-chr6:33215022..33224434,19	K562	blood:
7	chr6:33218974..33221536-chr6:33235701..33237284,2	MCF-7	breast:
8	chr6:32934886..32941336-chr6:33214658..33220920,14	K562	blood:
9	chr6:33220784..33224389-chr6:33238072..33241336,5	MCF-7	breast:
10	chr6:33215322..33223570-chr6:33237379..33242085,16	MCF-7	breast:
11	chr6:33219511..33221442-chr6:33225832..33227338,2	MCF-7	breast:
12	chr6:33214775..33224346-chr6:33236521..33248678,40	K562	blood:
13	chr6:33173605..33177236-chr6:33220401..33223882,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112473	Chromatin interaction
ENSG00000202441	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000232940	Chromatin interaction
ENSG00000204257	Chromatin interaction
ENSG00000227057	Chromatin interaction
ENSG00000199036	Chromatin interaction
ENSG00000231500	Chromatin interaction
ENSG00000235863	Chromatin interaction
ENSG00000204231	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000263756	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000204227	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs3173275	0.92[AFR][1000 genomes]
rs57582515	0.94[AFR][1000 genomes]
rs58759132	0.94[AFR][1000 genomes]
rs58883992	0.99[AFR][1000 genomes]
rs59097151	0.95[AFR][1000 genomes]
rs59531270	0.94[AFR][1000 genomes]
rs60170976	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60813085	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931141	0.92[AFR][1000 genomes]
rs73408048	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408053	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408065	0.98[AFR][1000 genomes]
rs73408067	1.00[AFR][1000 genomes]
rs73410003	0.97[AFR][1000 genomes]
rs73410010	0.97[AFR][1000 genomes]
rs73410043	0.90[AFR][1000 genomes]
rs73410049	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462893	chr6:33142539-33256471	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv602830	chr6:33142539-33256471	Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
4	nsv462894	chr6:33174783-33254665	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
5	nsv602831	chr6:33174783-33254665	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33217400-33234200	Weak transcription	Small Intestine	intestine
2	chr6:33217800-33231200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:33217800-33231200	Weak transcription	Aorta	Aorta
4	chr6:33217800-33231400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33218000-33224800	Weak transcription	Lung	lung
6	chr6:33218000-33225000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:33218000-33225000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:33218000-33226400	Weak transcription	Spleen	Spleen
9	chr6:33218000-33226600	Weak transcription	Ovary	ovary
10	chr6:33218000-33231200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr6:33218000-33231200	Weak transcription	Gastric	stomach
12	chr6:33218000-33231400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:33218000-33231600	Weak transcription	Psoas Muscle	Psoas
14	chr6:33218000-33235400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr6:33218000-33238800	Weak transcription	Right Atrium	heart
16	chr6:33218200-33223600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:33218200-33226600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:33218200-33227200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr6:33218200-33231800	Weak transcription	Fetal Brain Male	brain
20	chr6:33218400-33222400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:33218400-33226200	Weak transcription	Primary B cells from cord blood	blood
22	chr6:33218400-33226600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:33218400-33231200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr6:33218400-33231400	Weak transcription	Stomach Mucosa	stomach
25	chr6:33218400-33234200	Weak transcription	Fetal Heart	heart
26	chr6:33218600-33225600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:33218600-33226400	Weak transcription	Left Ventricle	heart
28	chr6:33218600-33226600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:33218600-33226800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:33218600-33231200	Weak transcription	A549	lung
31	chr6:33218600-33231400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:33218600-33231600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr6:33218600-33233200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr6:33218600-33234200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:33218800-33221000	Strong transcription	Duodenum Mucosa	Duodenum
36	chr6:33218800-33222200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:33218800-33222200	Weak transcription	HMEC	breast
38	chr6:33218800-33224200	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr6:33218800-33225200	Weak transcription	Pancreas	Pancrea
40	chr6:33218800-33226600	Weak transcription	Brain Angular Gyrus	brain
41	chr6:33218800-33226600	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:33218800-33226800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr6:33218800-33226800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:33218800-33228000	Weak transcription	Fetal Brain Female	brain
45	chr6:33218800-33228000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:33218800-33228000	Weak transcription	Hela-S3	cervix
47	chr6:33218800-33230600	Weak transcription	Right Ventricle	heart
48	chr6:33218800-33232000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:33218800-33235400	Weak transcription	HUVEC	blood vessel
50	chr6:33219000-33221200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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