Variant report

Variant	rs59097151
Chromosome Location	chr6:33269211-33269212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:33269024-33269281	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:33259755..33275794-chr6:33276314..33291745,68	MCF-7	breast:
2	chr6:33265384..33269852-chr6:33356528..33361842,9	K562	blood:
3	chr6:33264179..33271329-chr6:33356528..33360865,9	K562	blood:
4	chr6:33263619..33269524-chr6:33392449..33400505,13	K562	blood:

Variant related genes	Relation type
RGL2	TF binding region
ENSG00000204209	Chromatin interaction
ENSG00000225644	Chromatin interaction
ENSG00000236104	Chromatin interaction
ENSG00000237649	Chromatin interaction
ENSG00000197283	Chromatin interaction
ENSG00000231925	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs3173275	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56999860	0.80[AFR][1000 genomes]
rs57582515	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57745261	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58283032	0.81[AFR][1000 genomes]
rs58759132	0.95[AFR][1000 genomes]
rs58883992	0.96[AFR][1000 genomes]
rs59142568	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59368071	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59531270	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60170976	0.96[AFR][1000 genomes]
rs60813085	0.86[AFR][1000 genomes]
rs6906693	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6908509	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6920095	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6931141	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73408048	0.86[AFR][1000 genomes]
rs73408053	0.88[AFR][1000 genomes]
rs73408061	0.95[AFR][1000 genomes]
rs73408065	0.95[AFR][1000 genomes]
rs73408067	0.95[AFR][1000 genomes]
rs73410003	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410010	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410043	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410049	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
2	nsv830635	chr6:33238005-33413787	Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	129 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33268000-33269400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:33268000-33271600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr6:33268000-33271600	Weak transcription	Ovary	ovary
4	chr6:33268000-33271800	Weak transcription	Aorta	Aorta
5	chr6:33268000-33272200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr6:33268000-33272800	Weak transcription	Small Intestine	intestine
7	chr6:33268000-33273600	Weak transcription	Stomach Mucosa	stomach
8	chr6:33268200-33269400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:33268200-33269400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr6:33268200-33269400	Enhancers	Adipose Nuclei	Adipose
11	chr6:33268200-33269400	Weak transcription	Left Ventricle	heart
12	chr6:33268200-33269600	Enhancers	Brain Hippocampus Middle	brain
13	chr6:33268200-33270600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:33268200-33270600	Weak transcription	NHLF	lung
15	chr6:33268200-33271200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr6:33268200-33271200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:33268200-33271200	Weak transcription	Brain Angular Gyrus	brain
18	chr6:33268200-33271400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:33268200-33271400	Weak transcription	Brain Anterior Caudate	brain
20	chr6:33268200-33271400	Weak transcription	Colon Smooth Muscle	Colon
21	chr6:33268200-33271400	Weak transcription	Fetal Lung	lung
22	chr6:33268200-33271400	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:33268200-33271400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr6:33268200-33271600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:33268200-33271600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:33268200-33271600	Weak transcription	Brain Cingulate Gyrus	brain
27	chr6:33268200-33271600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:33268200-33271600	Weak transcription	Brain Substantia Nigra	brain
29	chr6:33268200-33271600	Weak transcription	Colonic Mucosa	Colon
30	chr6:33268200-33271600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr6:33268200-33271600	Weak transcription	Fetal Kidney	kidney
32	chr6:33268200-33271600	Weak transcription	Gastric	stomach
33	chr6:33268200-33271600	Weak transcription	Lung	lung
34	chr6:33268200-33271600	Weak transcription	Right Ventricle	heart
35	chr6:33268200-33271600	Weak transcription	NHDF-Ad	bronchial
36	chr6:33268200-33271800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:33268200-33272800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:33268200-33273000	Weak transcription	A549	lung
39	chr6:33268200-33279400	Strong transcription	Fetal Intestine Small	intestine
40	chr6:33268200-33279600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr6:33268200-33279800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:33268200-33279800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr6:33268200-33279800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:33268200-33279800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr6:33268200-33279800	Weak transcription	Right Atrium	heart
46	chr6:33268200-33279800	Weak transcription	HSMMtube	muscle
47	chr6:33268400-33269400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:33268400-33269400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr6:33268400-33269400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr6:33268400-33269400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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