Variant report

Variant	rs58883992
Chromosome Location	chr6:33213020-33213021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33211202..33213671-chr6:33239758..33241262,2	K562	blood:
2	chr6:33170516..33184004-chr6:33208467..33219908,34	K562	blood:

Variant related genes	Relation type
ENSG00000225463	Chromatin interaction
ENSG00000223501	Chromatin interaction
ENSG00000204228	Chromatin interaction
ENSG00000199036	Chromatin interaction
ENSG00000204227	Chromatin interaction
ENSG00000231500	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs3173275	0.94[AFR][1000 genomes]
rs56999860	0.80[AFR][1000 genomes]
rs57582515	0.95[AFR][1000 genomes]
rs58283032	0.81[AFR][1000 genomes]
rs58759132	0.95[AFR][1000 genomes]
rs59097151	0.96[AFR][1000 genomes]
rs59142568	0.81[AFR][1000 genomes]
rs59368071	0.81[AFR][1000 genomes]
rs59531270	0.95[AFR][1000 genomes]
rs60170976	1.00[AFR][1000 genomes]
rs60813085	0.90[AFR][1000 genomes]
rs6906693	0.81[AFR][1000 genomes]
rs6908509	0.81[AFR][1000 genomes]
rs6920095	0.81[AFR][1000 genomes]
rs6931141	0.94[AFR][1000 genomes]
rs73408048	0.90[AFR][1000 genomes]
rs73408053	0.92[AFR][1000 genomes]
rs73408061	0.99[AFR][1000 genomes]
rs73408065	0.99[AFR][1000 genomes]
rs73408067	0.99[AFR][1000 genomes]
rs73410003	0.98[AFR][1000 genomes]
rs73410010	0.98[AFR][1000 genomes]
rs73410043	0.91[AFR][1000 genomes]
rs73410049	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462893	chr6:33142539-33256471	Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv602830	chr6:33142539-33256471	Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv830634	chr6:33161217-33330745	Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	139 gene(s)	inside rSNPs	diseases
4	nsv462894	chr6:33174783-33254665	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases
5	nsv602831	chr6:33174783-33254665	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	87 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33208200-33216000	Weak transcription	Right Atrium	heart
2	chr6:33210000-33215800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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