Variant report

Variant	rs56959373
Chromosome Location	chr12:104088206-104088207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1438321	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1532298	1.00[EUR][1000 genomes]
rs17034384	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17034394	0.83[AFR][1000 genomes]
rs17034395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17034465	1.00[EUR][1000 genomes]
rs3851628	1.00[EUR][1000 genomes]
rs58956630	1.00[EUR][1000 genomes]
rs7135923	1.00[EUR][1000 genomes]
rs7136163	1.00[EUR][1000 genomes]
rs7138431	0.86[AFR][1000 genomes]
rs7302137	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7303189	1.00[EUR][1000 genomes]
rs7959003	1.00[EUR][1000 genomes]
rs7970860	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560038	chr12:104053420-104092996	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104074800-104089400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr12:104086000-104091200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr12:104087200-104089800	Weak transcription	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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