Variant report

Variant	rs1532298
Chromosome Location	chr12:104016942-104016943
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1438321	1.00[EUR][1000 genomes]
rs17034023	1.00[EUR][1000 genomes]
rs17034384	1.00[EUR][1000 genomes]
rs17034395	1.00[EUR][1000 genomes]
rs17034465	1.00[EUR][1000 genomes]
rs3851628	1.00[EUR][1000 genomes]
rs56959373	1.00[EUR][1000 genomes]
rs58956630	1.00[EUR][1000 genomes]
rs59209055	1.00[EUR][1000 genomes]
rs7135923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7136163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7302137	1.00[EUR][1000 genomes]
rs7303189	1.00[EUR][1000 genomes]
rs7959003	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7970860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052275	chr12:104008918-104044241	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104011600-104020800	Weak transcription	Spleen	Spleen
2	chr12:104015800-104017200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:104016000-104022200	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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