Variant report

Variant	rs59209055
Chromosome Location	chr12:103898011-103898012
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1532298	1.00[EUR][1000 genomes]
rs17034023	1.00[EUR][1000 genomes]
rs3851628	1.00[EUR][1000 genomes]
rs7135923	1.00[EUR][1000 genomes]
rs7136163	1.00[EUR][1000 genomes]
rs7302137	1.00[EUR][1000 genomes]
rs7959003	1.00[EUR][1000 genomes]
rs7970860	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528405	chr12:103896595-103901502	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:103895800-103898200	Enhancers	Thymus	Thymus
2	chr12:103897200-103900000	Enhancers	HMEC	breast
3	chr12:103897400-103898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:103897400-103899600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr12:103898000-103898400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:103898000-103898600	Enhancers	GM12878-XiMat	blood
7	chr12:103898000-103899000	Weak transcription	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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