Variant report

Variant	rs56962423
Chromosome Location	chr3:56480161-56480162
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11714171	0.84[EUR][1000 genomes]
rs11715404	0.80[EUR][1000 genomes]
rs11719646	0.81[EUR][1000 genomes]
rs11923602	0.84[EUR][1000 genomes]
rs1352765	0.81[EUR][1000 genomes]
rs17056833	0.82[EUR][1000 genomes]
rs55833786	0.84[EUR][1000 genomes]
rs57352922	0.85[EUR][1000 genomes]
rs72875345	0.83[EUR][1000 genomes]
rs7645578	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs923653	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3383044	chr3:56466497-56483664	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3347557	chr3:56466500-56619322	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56469000-56481000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:56469000-56492600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:56478000-56486800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:56479000-56480400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:56479400-56480200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:56479600-56480200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr3:56480000-56480800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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