Variant report

Variant	rs11715404
Chromosome Location	chr3:56462386-56462387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:56439625..56442094-chr3:56460240..56463198,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10510786	0.93[ASN][1000 genomes]
rs11708250	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11712094	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11719646	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11923602	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1352765	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1388254	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17056833	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17825463	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55783589	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55801834	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55833786	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56962423	0.80[EUR][1000 genomes]
rs57164168	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57352922	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6801539	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72875310	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72875345	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7625995	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs923653	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:56447400-56469200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:56450000-56467800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:56450000-56469800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:56456400-56479600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:56456600-56465400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:56456600-56467400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:56456800-56467000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr3:56456800-56467400	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:56456800-56467400	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:56456800-56467400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:56456800-56467600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr3:56456800-56468000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr3:56456800-56468400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:56457600-56473400	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:56457800-56463200	Weak transcription	Pancreas	Pancrea
16	chr3:56458000-56474800	Weak transcription	Fetal Heart	heart
17	chr3:56458600-56468400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:56460000-56466600	Weak transcription	Brain Germinal Matrix	brain
19	chr3:56460800-56467400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:56461600-56463200	Enhancers	Liver	Liver
21	chr3:56461800-56462400	Strong transcription	Fetal Brain Female	brain
22	chr3:56462000-56466400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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