Variant report

Variant	rs56967732
Chromosome Location	chr3:100171925-100171926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100119733..100122215-chr3:100171040..100173850,2	K562	blood:

Variant related genes	Relation type
ENSG00000206535	Chromatin interaction
ENSG00000154174	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56285859	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60776682	0.95[ASN][1000 genomes]
rs72943236	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72943237	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72943243	0.95[ASN][1000 genomes]
rs72943246	0.92[EUR][1000 genomes]
rs7429860	0.82[AFR][1000 genomes]
rs7647125	0.83[ASN][1000 genomes]
rs7647289	0.95[ASN][1000 genomes]
rs7647505	0.83[ASN][1000 genomes]
rs9290057	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820789	0.89[AFR][1000 genomes]
rs9881564	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100144200-100175600	Weak transcription	Psoas Muscle	Psoas
2	chr3:100146400-100177800	Weak transcription	Ovary	ovary
3	chr3:100148200-100182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr3:100158400-100176400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:100163000-100177200	Weak transcription	HepG2	liver
6	chr3:100163400-100176400	Weak transcription	Fetal Lung	lung
7	chr3:100166800-100173600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:100168600-100176200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:100168800-100174000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:100168800-100175600	Weak transcription	Brain Germinal Matrix	brain
11	chr3:100168800-100177800	Weak transcription	Left Ventricle	heart
12	chr3:100169400-100175600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr3:100169800-100174400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr3:100169800-100176400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:100170000-100172600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:100170000-100172800	Weak transcription	Stomach Smooth Muscle	stomach
17	chr3:100170000-100174600	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:100170200-100175000	Weak transcription	Fetal Brain Female	brain
19	chr3:100170400-100173000	Weak transcription	Fetal Intestine Small	intestine
20	chr3:100170600-100172400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:100170600-100176400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr3:100170600-100177400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr3:100170800-100172000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr3:100170800-100173200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:100170800-100175800	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr3:100170800-100175800	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr3:100170800-100177400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr3:100171000-100173200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr3:100171200-100172000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr3:100171200-100172200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:100171200-100172400	Strong transcription	Fetal Stomach	stomach
32	chr3:100171600-100173000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:100171800-100172200	ZNF genes & repeats	Aorta	Aorta
34	chr3:100171800-100173400	Enhancers	Liver	Liver

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