Variant report

Variant	rs9290057
Chromosome Location	chr3:100154117-100154118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs56285859	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56967732	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60776682	0.89[ASN][1000 genomes]
rs72943236	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72943237	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72943243	0.89[ASN][1000 genomes]
rs72943246	0.92[EUR][1000 genomes]
rs7429860	0.85[AFR][1000 genomes]
rs7647289	0.89[ASN][1000 genomes]
rs9810704	1.00[CEU][hapmap]
rs9820789	0.89[AFR][1000 genomes]
rs9881564	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100130600-100162800	Weak transcription	Fetal Brain Male	brain
2	chr3:100132800-100157800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:100144200-100175600	Weak transcription	Psoas Muscle	Psoas
4	chr3:100145200-100156800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:100145200-100162400	Weak transcription	HepG2	liver
6	chr3:100146400-100156800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:100146400-100163200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:100146400-100177800	Weak transcription	Ovary	ovary
9	chr3:100147000-100157200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:100148200-100182400	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:100149000-100154400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr3:100149400-100162400	Weak transcription	Fetal Lung	lung
13	chr3:100149400-100171800	Weak transcription	Aorta	Aorta
14	chr3:100152600-100156200	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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