Variant report

Variant	rs56971682
Chromosome Location	chr10:44449753-44449754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs60071723	1.00[AMR][1000 genomes]
rs60146158	0.92[AFR][1000 genomes]
rs74138951	0.92[AFR][1000 genomes]
rs74138953	0.92[AFR][1000 genomes]
rs74138957	1.00[AFR][1000 genomes]
rs74138958	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138959	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138960	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138962	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138963	1.00[AMR][1000 genomes]
rs74138965	0.92[AFR][1000 genomes]
rs74138966	1.00[AMR][1000 genomes]
rs74138968	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138969	1.00[AMR][1000 genomes]
rs74138975	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44437600-44460800	Weak transcription	Gastric	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links