Variant report

Variant	rs74138951
Chromosome Location	chr10:44435567-44435568
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C10orf136-1	chr10:44434451-44435990	XLOC_008473

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55792208	1.00[AMR][1000 genomes]
rs56333140	1.00[AMR][1000 genomes]
rs56832227	1.00[AMR][1000 genomes]
rs56971682	0.92[AFR][1000 genomes]
rs57792249	1.00[AMR][1000 genomes]
rs59695605	1.00[AMR][1000 genomes]
rs60146158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61141534	1.00[AMR][1000 genomes]
rs73270208	1.00[AMR][1000 genomes]
rs73270215	1.00[AMR][1000 genomes]
rs74138076	1.00[AMR][1000 genomes]
rs74138078	1.00[AMR][1000 genomes]
rs74138081	1.00[AMR][1000 genomes]
rs74138085	1.00[AMR][1000 genomes]
rs74138088	1.00[AMR][1000 genomes]
rs74138090	1.00[AMR][1000 genomes]
rs74138904	1.00[AMR][1000 genomes]
rs74138908	1.00[AMR][1000 genomes]
rs74138909	1.00[AMR][1000 genomes]
rs74138917	1.00[AMR][1000 genomes]
rs74138926	1.00[AMR][1000 genomes]
rs74138932	1.00[AMR][1000 genomes]
rs74138933	1.00[AMR][1000 genomes]
rs74138934	1.00[AMR][1000 genomes]
rs74138936	1.00[AMR][1000 genomes]
rs74138940	1.00[AMR][1000 genomes]
rs74138952	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138957	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138958	0.92[AFR][1000 genomes]
rs74138959	0.92[AFR][1000 genomes]
rs74138960	1.00[AFR][1000 genomes]
rs74138962	1.00[AFR][1000 genomes]
rs74138965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138968	1.00[AFR][1000 genomes]
rs74138975	1.00[AFR][1000 genomes]
rs74138983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44422800-44437600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44434200-44438400	Enhancers	Fetal Brain Male	brain
3	chr10:44434200-44438800	Enhancers	Fetal Muscle Leg	muscle
4	chr10:44434400-44436400	Enhancers	GM12878-XiMat	blood
5	chr10:44434400-44438200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:44434400-44438600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:44434400-44438600	Enhancers	NHDF-Ad	bronchial
8	chr10:44434400-44441600	Enhancers	Fetal Heart	heart
9	chr10:44434600-44435600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:44434600-44436400	Weak transcription	Pancreas	Pancrea
11	chr10:44434600-44437600	Enhancers	Fetal Muscle Trunk	muscle
12	chr10:44434600-44439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr10:44434600-44439200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:44434800-44435600	Enhancers	Primary hematopoietic stem cells	blood
15	chr10:44434800-44438800	Enhancers	Fetal Stomach	stomach
16	chr10:44434800-44439200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:44435000-44435600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:44435000-44436800	Enhancers	HSMMtube	muscle
19	chr10:44435000-44437600	Enhancers	Right Ventricle	heart
20	chr10:44435000-44438000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:44435000-44438800	Enhancers	Fetal Lung	lung
22	chr10:44435000-44439600	Enhancers	Fetal Thymus	thymus
23	chr10:44435200-44441200	Enhancers	Left Ventricle	heart
24	chr10:44435400-44435800	Enhancers	Lung	lung
25	chr10:44435400-44436000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:44435400-44436000	Enhancers	HSMM	muscle
27	chr10:44435400-44436200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr10:44435400-44437400	Enhancers	Ovary	ovary
29	chr10:44435400-44438000	Enhancers	Fetal Brain Female	brain
30	chr10:44435400-44438400	Enhancers	NHLF	lung
31	chr10:44435400-44438600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr10:44435400-44441000	Enhancers	Right Atrium	heart

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