Variant report

Variant	rs74138933
Chromosome Location	chr10:44399708-44399709
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs55792208	1.00[AMR][1000 genomes]
rs56333140	1.00[AMR][1000 genomes]
rs56832227	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57792249	1.00[AMR][1000 genomes]
rs59695605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60146158	1.00[AMR][1000 genomes]
rs61141534	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73270208	1.00[AMR][1000 genomes]
rs73270215	1.00[AMR][1000 genomes]
rs74138076	1.00[AMR][1000 genomes]
rs74138078	1.00[AMR][1000 genomes]
rs74138081	1.00[AMR][1000 genomes]
rs74138085	1.00[AMR][1000 genomes]
rs74138088	1.00[AMR][1000 genomes]
rs74138090	1.00[AMR][1000 genomes]
rs74138904	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138909	1.00[AMR][1000 genomes]
rs74138917	1.00[AMR][1000 genomes]
rs74138926	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138932	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138951	1.00[AMR][1000 genomes]
rs74138952	1.00[AMR][1000 genomes]
rs74138953	1.00[AMR][1000 genomes]
rs74138957	1.00[AMR][1000 genomes]
rs74138965	1.00[AMR][1000 genomes]
rs74138983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44392400-44402000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44395000-44406200	Weak transcription	Esophagus	oesophagus
3	chr10:44395200-44400000	Weak transcription	Fetal Heart	heart
4	chr10:44395200-44400000	Weak transcription	Left Ventricle	heart
5	chr10:44395200-44400200	Weak transcription	Fetal Kidney	kidney
6	chr10:44395400-44400400	Weak transcription	NHDF-Ad	bronchial
7	chr10:44395800-44399800	Weak transcription	Adipose Nuclei	Adipose
8	chr10:44395800-44401400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:44396000-44399800	Weak transcription	Right Atrium	heart
10	chr10:44396000-44399800	Weak transcription	Spleen	Spleen
11	chr10:44396400-44401200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:44397200-44400400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:44397200-44400800	Weak transcription	Osteobl	bone
14	chr10:44397800-44400000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:44397800-44400400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr10:44397800-44401000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr10:44398800-44402600	Enhancers	Fetal Muscle Leg	muscle
18	chr10:44399200-44403400	Enhancers	Ovary	ovary
19	chr10:44399400-44402400	Enhancers	Fetal Muscle Trunk	muscle
20	chr10:44399400-44402600	Enhancers	Fetal Stomach	stomach
21	chr10:44399600-44399800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:44399600-44400600	Enhancers	Right Ventricle	heart

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