Variant report
| Variant | rs74138078 |
|---|---|
| Chromosome Location | chr10:44284454-44284455 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ZNF32-7 | chr10:44282860-44285865 | NR_002726 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs55792208 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56333140 | 1.00[AMR][1000 genomes] |
| rs56832227 | 1.00[AMR][1000 genomes] |
| rs57792249 | 1.00[AMR][1000 genomes] |
| rs59695605 | 1.00[AMR][1000 genomes] |
| rs60146158 | 1.00[AMR][1000 genomes] |
| rs61116341 | 1.00[AMR][1000 genomes] |
| rs61141534 | 1.00[AMR][1000 genomes] |
| rs73270208 | 1.00[AMR][1000 genomes] |
| rs73270215 | 1.00[AMR][1000 genomes] |
| rs74138066 | 0.91[AFR][1000 genomes] |
| rs74138076 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74138081 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74138085 | 1.00[AMR][1000 genomes] |
| rs74138088 | 1.00[AMR][1000 genomes] |
| rs74138090 | 1.00[AMR][1000 genomes] |
| rs74138189 | 1.00[AMR][1000 genomes] |
| rs74138200 | 1.00[AMR][1000 genomes] |
| rs74138904 | 1.00[AMR][1000 genomes] |
| rs74138908 | 1.00[AMR][1000 genomes] |
| rs74138909 | 1.00[AMR][1000 genomes] |
| rs74138917 | 1.00[AMR][1000 genomes] |
| rs74138926 | 1.00[AMR][1000 genomes] |
| rs74138932 | 1.00[AMR][1000 genomes] |
| rs74138933 | 1.00[AMR][1000 genomes] |
| rs74138934 | 1.00[AMR][1000 genomes] |
| rs74138936 | 1.00[AMR][1000 genomes] |
| rs74138940 | 1.00[AMR][1000 genomes] |
| rs74138951 | 1.00[AMR][1000 genomes] |
| rs74138952 | 1.00[AMR][1000 genomes] |
| rs74138953 | 1.00[AMR][1000 genomes] |
| rs74138957 | 1.00[AMR][1000 genomes] |
| rs74138965 | 1.00[AMR][1000 genomes] |
| rs74140047 | 0.81[AFR][1000 genomes] |
| rs9663770 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv947899 | chr10:44283049-44286085 | Enhancers Weak transcription | TF binding regionCpG islandlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:44277800-44295000 | Weak transcription | Spleen | Spleen |
| 2 | chr10:44281600-44289600 | Weak transcription | Right Atrium | heart |
