Variant report

Variant	rs74138952
Chromosome Location	chr10:44440261-44440262
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs55792208	1.00[AMR][1000 genomes]
rs56333140	1.00[AMR][1000 genomes]
rs56832227	1.00[AMR][1000 genomes]
rs57792249	1.00[AMR][1000 genomes]
rs59695605	1.00[AMR][1000 genomes]
rs60146158	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61141534	1.00[AMR][1000 genomes]
rs73270208	1.00[AMR][1000 genomes]
rs73270215	1.00[AMR][1000 genomes]
rs74138076	1.00[AMR][1000 genomes]
rs74138078	1.00[AMR][1000 genomes]
rs74138081	1.00[AMR][1000 genomes]
rs74138085	1.00[AMR][1000 genomes]
rs74138088	1.00[AMR][1000 genomes]
rs74138090	1.00[AMR][1000 genomes]
rs74138904	1.00[AMR][1000 genomes]
rs74138908	1.00[AMR][1000 genomes]
rs74138909	1.00[AMR][1000 genomes]
rs74138917	1.00[AMR][1000 genomes]
rs74138926	1.00[AMR][1000 genomes]
rs74138932	1.00[AMR][1000 genomes]
rs74138933	1.00[AMR][1000 genomes]
rs74138934	1.00[AMR][1000 genomes]
rs74138936	1.00[AMR][1000 genomes]
rs74138940	1.00[AMR][1000 genomes]
rs74138951	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138953	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138957	1.00[AMR][1000 genomes]
rs74138960	0.85[AFR][1000 genomes]
rs74138962	0.85[AFR][1000 genomes]
rs74138965	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138968	0.85[AFR][1000 genomes]
rs74138975	0.85[AFR][1000 genomes]
rs74138983	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3420933	chr10:44437771-44440319	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44434400-44441600	Enhancers	Fetal Heart	heart
2	chr10:44435200-44441200	Enhancers	Left Ventricle	heart
3	chr10:44435400-44441000	Enhancers	Right Atrium	heart
4	chr10:44436000-44440600	Weak transcription	Osteobl	bone
5	chr10:44436400-44440600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:44437400-44441400	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:44437600-44460800	Weak transcription	Gastric	stomach
8	chr10:44438800-44441400	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:44439000-44440800	Enhancers	Fetal Kidney	kidney
10	chr10:44439200-44440400	Enhancers	Fetal Lung	lung
11	chr10:44439200-44441200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr10:44439600-44440600	Enhancers	Fetal Intestine Small	intestine
13	chr10:44439600-44440800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr10:44439600-44441600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr10:44439800-44441000	Enhancers	Fetal Muscle Trunk	muscle
16	chr10:44440200-44440600	Enhancers	Lung	lung
17	chr10:44440200-44440800	Enhancers	NHDF-Ad	bronchial
18	chr10:44440200-44441200	Enhancers	Right Ventricle	heart
19	chr10:44440200-44441600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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