Variant report

Variant	rs74138983
Chromosome Location	chr10:44496885-44496886
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs56333140	1.00[AMR][1000 genomes]
rs56832227	1.00[AMR][1000 genomes]
rs57792249	1.00[AMR][1000 genomes]
rs59695605	1.00[AMR][1000 genomes]
rs60146158	1.00[AMR][1000 genomes]
rs61141534	1.00[AMR][1000 genomes]
rs73270208	1.00[AMR][1000 genomes]
rs73270215	1.00[AMR][1000 genomes]
rs74138090	1.00[AMR][1000 genomes]
rs74138904	1.00[AMR][1000 genomes]
rs74138908	1.00[AMR][1000 genomes]
rs74138909	1.00[AMR][1000 genomes]
rs74138917	1.00[AMR][1000 genomes]
rs74138926	1.00[AMR][1000 genomes]
rs74138932	1.00[AMR][1000 genomes]
rs74138933	1.00[AMR][1000 genomes]
rs74138934	1.00[AMR][1000 genomes]
rs74138936	1.00[AMR][1000 genomes]
rs74138940	1.00[AMR][1000 genomes]
rs74138951	1.00[AMR][1000 genomes]
rs74138952	1.00[AMR][1000 genomes]
rs74138953	1.00[AMR][1000 genomes]
rs74138957	1.00[AMR][1000 genomes]
rs74138965	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44494200-44502600	Weak transcription	Right Atrium	heart
2	chr10:44494600-44499200	Weak transcription	NHDF-Ad	bronchial
3	chr10:44495800-44504400	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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