Variant report

Variant	rs569745402
Chromosome Location	chr1:228871711-228871712
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:228871650..228872336-chr1:229283932..229284444,2	MCF-7	breast:
2	chr1:228870974..228874192-chr1:229289899..229293413,3	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013051	chr1:228786702-228903706	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv997801	chr1:228786702-228975127	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv870365	chr1:228788356-229267904	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv998255	chr1:228791784-228919202	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv549299	chr1:228793246-229455876	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv468316	chr1:228854703-228919202	Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv549300	chr1:228854703-228919202	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	esv3405929	chr1:228869854-228872702	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:228870200-228872000	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr1:228870200-228875400	Active TSS	Brain Angular Gyrus	brain
3	chr1:228870400-228872000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:228870400-228872000	Active TSS	Fetal Stomach	stomach
5	chr1:228870400-228872200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr1:228870400-228872200	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr1:228870400-228872400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr1:228870400-228872400	Bivalent/Poised TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:228870400-228872800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr1:228870400-228873200	Active TSS	Fetal Intestine Small	intestine
11	chr1:228870400-228873400	Active TSS	Fetal Intestine Large	intestine
12	chr1:228870400-228873800	Active TSS	Aorta	Aorta
13	chr1:228870400-228873800	Active TSS	Colonic Mucosa	Colon
14	chr1:228870400-228873800	Active TSS	Right Ventricle	heart
15	chr1:228870400-228874000	Active TSS	Brain Anterior Caudate	brain
16	chr1:228870400-228874200	Active TSS	Duodenum Smooth Muscle	Duodenum
17	chr1:228870600-228871800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:228870600-228871800	Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr1:228870600-228871800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr1:228870600-228871800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:228870600-228872000	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:228870600-228872000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
23	chr1:228870600-228872000	Bivalent/Poised TSS	HSMMtube	muscle
24	chr1:228870600-228872000	Bivalent/Poised TSS	NH-A	brain
25	chr1:228870600-228872200	Active TSS	Primary T helper naive cells from peripheral blood	blood
26	chr1:228870600-228872200	Active TSS	Fetal Kidney	kidney
27	chr1:228870600-228872200	Bivalent/Poised TSS	NHLF	lung
28	chr1:228870600-228872400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr1:228870600-228872400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr1:228870600-228872400	Active TSS	Left Ventricle	heart
31	chr1:228870600-228872400	Active TSS	NHDF-Ad	bronchial
32	chr1:228870600-228872600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
33	chr1:228870600-228872600	Active TSS	Primary T cells from cord blood	blood
34	chr1:228870600-228872800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:228870600-228873000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr1:228870600-228873000	Active TSS	Colon Smooth Muscle	Colon
37	chr1:228870600-228873000	Active TSS	A549	lung
38	chr1:228870600-228873200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
39	chr1:228870600-228873200	Active TSS	Liver	Liver
40	chr1:228870600-228873200	Active TSS	Ovary	ovary
41	chr1:228870600-228873400	Active TSS	Pancreas	Pancrea
42	chr1:228870600-228873400	Active TSS	Placenta Amnion	Placenta Amnion
43	chr1:228870600-228873400	Active TSS	Psoas Muscle	Psoas
44	chr1:228870600-228873600	Active TSS	Brain Substantia Nigra	brain
45	chr1:228870600-228873600	Active TSS	Duodenum Mucosa	Duodenum
46	chr1:228870600-228873600	Active TSS	Fetal Lung	lung
47	chr1:228870600-228874000	Active TSS	Breast Myoepithelial Primary Cells	Breast
48	chr1:228870600-228874000	Active TSS	Right Atrium	heart
49	chr1:228870600-228874200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr1:228870600-228874400	Active TSS	Brain Inferior Temporal Lobe	brain

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