Variant report

Variant	rs569890240
Chromosome Location	chr3:21706578-21706579
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:21705697..21707746-chr3:21710936..21713423,2	MCF-7	breast:
2	chr3:21705075..21707006-chr3:21711502..21714008,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534005	chr3:21387588-22003293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1010460	chr3:21516810-21839871	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv834631	chr3:21612283-21763887	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1007048	chr3:21666807-21865229	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv536516	chr3:21666807-21865229	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv589896	chr3:21692393-21712269	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1840124	chr3:21706503-21712269	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv1830276	chr3:21706503-21712422	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:21683800-21706600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:21685600-21707200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:21687200-21709600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:21687400-21706800	Weak transcription	Fetal Lung	lung
5	chr3:21688000-21707000	Weak transcription	Fetal Muscle Leg	muscle
6	chr3:21696600-21713400	Weak transcription	Fetal Heart	heart
7	chr3:21696800-21713200	Weak transcription	NHDF-Ad	bronchial
8	chr3:21699000-21707000	Weak transcription	Fetal Stomach	stomach
9	chr3:21702600-21706800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:21703800-21709600	Weak transcription	Left Ventricle	heart
11	chr3:21705200-21706800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:21705200-21710000	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:21705200-21713800	Weak transcription	Psoas Muscle	Psoas
14	chr3:21705800-21706600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:21705800-21706600	Weak transcription	HMEC	breast
16	chr3:21706200-21707400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:21706200-21707600	Enhancers	H9 Cell Line	embryonic stem cell
18	chr3:21706200-21707800	Enhancers	Aorta	Aorta
19	chr3:21706400-21707000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr3:21706400-21707200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr3:21706400-21707400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr3:21706400-21707400	Enhancers	Fetal Brain Female	brain
23	chr3:21706400-21707600	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr3:21706400-21707800	Enhancers	H1 Cell Line	embryonic stem cell
25	chr3:21706400-21708000	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:21706400-21708000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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