Variant report

Variant	rs569931707
Chromosome Location	chr10:976826-976827
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr10:976393-977067	MCF-7	breast:	n/a	n/a
2	ELF1	chr10:976455-976938	HepG2	liver:	n/a	chr10:976737-976750 chr10:976738-976749
3	CTCF	chr10:976820-976970	GM12869	blood:	n/a	chr10:976876-976889
4	EBF1	chr10:975918-976854	GM12878	blood:	n/a	n/a
5	CCNT2	chr10:976675-978128	K562	blood:	n/a	n/a
6	POLR2A	chr10:976696-976885	A549	lung:	n/a	n/a
7	TBP	chr10:976680-976849	HepG2	liver:	n/a	n/a
8	MAZ	chr10:976393-976889	K562	blood:	n/a	n/a
9	MAZ	chr10:976729-976915	Hela-S3	cervix:	n/a	n/a
10	GABPA	chr10:976248-977099	MCF-7	breast:	n/a	chr10:976865-976874
11	MAZ	chr10:976375-978384	IMR90	lung:	n/a	chr10:978023-978030
12	MXI1	chr10:976435-977050	HepG2	liver:	n/a	n/a
13	MAX	chr10:976363-976936	K562	blood:	n/a	n/a
14	FOXA1	chr10:976495-976866	T-47D	breast:	n/a	n/a
15	MAX	chr10:976754-976900	HepG2	liver:	n/a	n/a
16	MYC	chr10:976605-976855	MCF10A-Er-Src	breast:	n/a	n/a
17	POLR2A	chr10:976006-978240	IMR90	lung:	n/a	n/a
18	E2F6	chr10:976712-976866	K562	blood:	n/a	chr10:976843-976853
19	POLR2A	chr10:975961-978259	GM18526	blood:	n/a	n/a
20	CTCF	chr10:976790-976930	GM10266	blood:	n/a	chr10:976876-976889
21	CTCF	chr10:976740-976890	SK-N-SH_RA	brain:	n/a	chr10:976876-976889
22	POLR2A	chr10:976657-978728	A549	lung:	n/a	n/a
23	HA-E2F1	chr10:976453-976895	MCF-7	breast:	n/a	chr10:976843-976853
24	POLR2A	chr10:976438-976978	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr10:975533-977115	K562	blood:	n/a	n/a
26	CTCF	chr10:976760-976910	GM12874	blood:	n/a	chr10:976876-976889
27	ELF1	chr10:976430-978327	GM12878	blood:	n/a	chr10:977647-977658 chr10:977324-977336 chr10:977646-977659 chr10:977648-977657 chr10:976737-976750 chr10:977668-977680 chr10:976738-976749
28	POLR2A	chr10:975992-978265	GM12892	blood:	n/a	n/a
29	SIN3AK20	chr10:976606-976881	HepG2	liver:	n/a	n/a
30	ELF1	chr10:976486-976979	SK-N-SH	brain:	n/a	chr10:976737-976750 chr10:976738-976749
31	UBTF	chr10:975941-977823	K562	blood:	n/a	n/a
32	CTCF	chr10:976811-976957	GM19239	blood:	n/a	chr10:976876-976889
33	NR2F2	chr10:976325-977290	MCF-7	breast:	n/a	n/a
34	CTCF	chr10:976820-976970	GM12864	blood:	n/a	chr10:976876-976889
35	HEY1	chr10:976332-977101	K562	blood:	n/a	chr10:976783-976798 chr10:976864-976879
36	POLR2A	chr10:975853-977885	GM12892	blood:	n/a	n/a
37	GATA3	chr10:976400-976959	T-47D	breast:	n/a	n/a
38	UBTF	chr10:976383-977244	K562	blood:	n/a	n/a
39	CTCF	chr10:976692-977091	GM12878	blood:	n/a	chr10:976876-976889
40	CTCF	chr10:976720-976870	HUVEC	blood vessel:	n/a	n/a
41	RAD21	chr10:976715-976948	HepG2	liver:	n/a	chr10:976879-976889
42	E2F4	chr10:976419-976867	MCF10A-Er-Src	breast:	n/a	chr10:976843-976853
43	JUND	chr10:976066-976832	K562	blood:	n/a	chr10:976780-976789
44	POLR2A	chr10:975884-976854	GM12891	blood:	n/a	n/a
45	YY1	chr10:976452-977823	GM12892	blood:	n/a	chr10:977811-977820 chr10:977806-977820 chr10:976863-976877 chr10:977303-977312 chr10:977345-977354 chr10:977271-977293 chr10:977283-977293 chr10:977281-977293 chr10:977276-977295 chr10:977261-977270 chr10:977284-977292 chr10:976869-976883 chr10:977258-977272 chr10:976857-976871 chr10:977261-977272
46	CTCF	chr10:976821-976919	Fibrobl	skin:	n/a	chr10:976876-976889
47	POLR2A	chr10:976177-976841	GM12891	blood:	n/a	n/a
48	SIN3AK20	chr10:976718-977045	PANC-1	pancreas:	n/a	n/a
49	CTCF	chr10:976813-976916	ProgFib	skin:	n/a	chr10:976876-976889
50	YY1	chr10:976657-977871	GM12878	blood:	n/a	chr10:977811-977820 chr10:977806-977820 chr10:976863-976877 chr10:977303-977312 chr10:977345-977354 chr10:977271-977293 chr10:977283-977293 chr10:977281-977293 chr10:977276-977295 chr10:977261-977270 chr10:977284-977292 chr10:976869-976883 chr10:977258-977272 chr10:976857-976871 chr10:977261-977272

No.	Distal block	Cell Line	Cell type
1	chr10:975330..979257-chr10:1093215..1097529,5	K562	blood:
2	chr10:976566..978917-chr20:33411823..33413821,2	MCF-7	breast:
3	chr10:976344..979673-chr10:1032747..1036349,14	K562	blood:
4	chr10:974758..977274-chr10:1018618..1021450,2	K562	blood:
5	chr10:974670..978531-chr10:1101117..1104171,5	K562	blood:
6	chr10:975309..980832-chr10:1031626..1035973,12	K562	blood:
7	chr10:975582..978698-chr10:1119494..1122267,3	MCF-7	breast:
8	chr10:974439..980732-chr10:1030011..1038533,28	MCF-7	breast:
9	chr10:976647..980794-chr10:1093154..1097319,8	MCF-7	breast:
10	chr10:976200..979208-chr10:1093606..1097726,5	MCF-7	breast:
11	chr10:975330..979545-chr10:1093428..1097529,6	K562	blood:
12	chr10:976553..979064-chr17:56707717..56709888,2	MCF-7	breast:
13	chr10:974758..976966-chr10:1110782..1112393,2	MCF-7	breast:
14	chr10:976152..979108-chr10:1085303..1088696,4	MCF-7	breast:
15	chr10:974636..980819-chr10:1029938..1037009,15	MCF-7	breast:
16	chr10:975799..978442-chr10:1098842..1102725,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229869	TF binding region
ENSG00000107937	Chromatin interaction
ENSG00000238924	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000067064	Chromatin interaction
ENSG00000047056	Chromatin interaction
ENSG00000205740	Chromatin interaction
ENSG00000198646	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
5	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
6	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
9	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
11	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	nsv533861	chr10:945438-1382068	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
13	nsv530117	chr10:945438-1729634	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
14	nsv540408	chr10:955835-1260680	Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
15	nsv825207	chr10:957020-1005451	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv817532	chr10:964660-1885945	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
17	nsv825208	chr10:965883-1004836	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
18	esv3381643	chr10:975752-979950	Active TSS Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
19	esv3422446	chr10:975977-978525	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
20	esv3394984	chr10:976102-979400	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
21	esv3422999	chr10:976377-979825	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
22	esv3370662	chr10:976702-979450	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:975200-979200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:975600-978400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:975600-978400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:975600-978400	Active TSS	GM12878-XiMat	blood
5	chr10:975600-978800	Active TSS	Psoas Muscle	Psoas
6	chr10:975600-979000	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr10:975800-977200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:975800-978200	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr10:975800-978200	Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:975800-978200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr10:975800-978400	Active TSS	H9 Cell Line	embryonic stem cell
12	chr10:975800-978400	Active TSS	Fetal Intestine Large	intestine
13	chr10:975800-978400	Active TSS	NHLF	lung
14	chr10:976000-977200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr10:976000-978200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr10:976000-978200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr10:976000-978200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:976000-978200	Active TSS	HSMMtube	muscle
19	chr10:976000-978400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:976000-978400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:976000-978400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:976000-978400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:976000-978400	Active TSS	Esophagus	oesophagus
24	chr10:976000-978400	Active TSS	Fetal Intestine Small	intestine
25	chr10:976000-978400	Active TSS	Monocytes-CD14+_RO01746	blood
26	chr10:976000-978600	Active TSS	Ovary	ovary
27	chr10:976200-977000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:976200-977200	Active TSS	Stomach Mucosa	stomach
29	chr10:976200-978200	Active TSS	HUES48 Cell Line	embryonic stem cell
30	chr10:976200-978200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:976200-978200	Active TSS	Rectal Mucosa Donor 29	rectum
32	chr10:976200-978200	Active TSS	Sigmoid Colon	Sigmoid Colon
33	chr10:976200-978200	Active TSS	Small Intestine	intestine
34	chr10:976200-978200	Active TSS	NHDF-Ad	bronchial
35	chr10:976200-978400	Active TSS	H1 Cell Line	embryonic stem cell
36	chr10:976200-978400	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr10:976200-978400	Active TSS	Breast Myoepithelial Primary Cells	Breast
38	chr10:976200-978400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:976200-978400	Active TSS	Aorta	Aorta
40	chr10:976200-978400	Active TSS	Colonic Mucosa	Colon
41	chr10:976200-978400	Active TSS	Fetal Muscle Trunk	muscle
42	chr10:976200-978400	Active TSS	Placenta	Placenta
43	chr10:976200-978600	Active TSS	Left Ventricle	heart
44	chr10:976200-978600	Active TSS	Right Atrium	heart
45	chr10:976200-978600	Active TSS	Hela-S3	cervix
46	chr10:976200-978800	Active TSS	Right Ventricle	heart
47	chr10:976200-978800	Active TSS	A549	lung
48	chr10:976200-979000	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr10:976200-979000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr10:976200-979000	Active TSS	HSMM	muscle

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