Variant report

Variant	rs56997079
Chromosome Location	chr11:70866202-70866203
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11232217	0.85[AMR][1000 genomes]
rs11232227	0.85[AMR][1000 genomes]
rs11232364	0.85[AMR][1000 genomes]
rs12276523	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12278819	0.85[AMR][1000 genomes]
rs12282261	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12290753	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12290770	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12295668	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57067273	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs57989516	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59963161	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs6591903	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7946431	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70858200-70891000	Weak transcription	Gastric	stomach
2	chr11:70864600-70866800	Weak transcription	Fetal Intestine Large	intestine
3	chr11:70864600-70866800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr11:70864600-70867400	Weak transcription	HSMMtube	muscle
5	chr11:70864600-70874800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:70864600-70886000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr11:70865000-70869800	Weak transcription	Fetal Kidney	kidney
8	chr11:70865400-70866800	Weak transcription	Fetal Intestine Small	intestine
9	chr11:70865400-70880000	Weak transcription	A549	lung
10	chr11:70865600-70876400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:70865600-70876800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:70865600-70882400	Weak transcription	Placenta	Placenta
13	chr11:70865600-70885800	Weak transcription	Pancreas	Pancrea
14	chr11:70865800-70866800	Weak transcription	HepG2	liver
15	chr11:70865800-70867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:70865800-70870000	Weak transcription	Liver	Liver
17	chr11:70865800-70876400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links