Variant report

Variant	rs11232364
Chromosome Location	chr11:70876326-70876327
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10751032	1.00[ASN][1000 genomes]
rs10897639	1.00[EUR][1000 genomes]
rs10897640	1.00[EUR][1000 genomes]
rs10897641	1.00[EUR][1000 genomes]
rs10897642	0.94[EUR][1000 genomes]
rs11232205	1.00[EUR][1000 genomes]
rs11232208	1.00[EUR][1000 genomes]
rs11232209	1.00[EUR][1000 genomes]
rs11232210	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232214	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232226	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232227	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232230	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232298	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232299	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272719	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12276523	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278819	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12280157	1.00[EUR][1000 genomes]
rs12281887	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12282261	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12286150	1.00[EUR][1000 genomes]
rs12287456	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12289762	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290753	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290770	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293485	0.88[EUR][1000 genomes]
rs12294761	1.00[EUR][1000 genomes]
rs12295668	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56997079	0.85[AMR][1000 genomes]
rs57067273	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57989516	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59963161	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105616	1.00[EUR][1000 genomes]
rs73523256	1.00[EUR][1000 genomes]
rs73523258	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73523260	0.85[AMR][1000 genomes]
rs7941351	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70858200-70891000	Weak transcription	Gastric	stomach
2	chr11:70864600-70886000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:70865400-70880000	Weak transcription	A549	lung
4	chr11:70865600-70876400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:70865600-70876800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:70865600-70882400	Weak transcription	Placenta	Placenta
7	chr11:70865600-70885800	Weak transcription	Pancreas	Pancrea
8	chr11:70865800-70876400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:70866400-70881800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr11:70867200-70876600	Weak transcription	Fetal Intestine Large	intestine
11	chr11:70867600-70881600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:70867800-70876400	Weak transcription	HepG2	liver
13	chr11:70870400-70876800	Weak transcription	Liver	Liver
14	chr11:70871600-70883200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:70872200-70886000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr11:70873400-70876400	Weak transcription	Fetal Intestine Small	intestine
17	chr11:70874800-70880000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:70875000-70885800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:70876000-70876400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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