Variant report

Variant	rs11232230
Chromosome Location	chr11:70849700-70849701
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10751032	0.93[ASN][1000 genomes]
rs10897639	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10897640	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10897641	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10897642	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11232205	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232208	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232209	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232210	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232214	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232217	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232227	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232298	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232299	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232364	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12272719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276523	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12278819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12280157	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281887	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12282261	0.88[EUR][1000 genomes]
rs12286150	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12287456	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12289762	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12290753	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12290770	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12293485	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12294761	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295668	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1336	0.95[AMR][1000 genomes]
rs57067273	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57989516	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58061852	0.95[AMR][1000 genomes]
rs59963161	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6591903	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7105616	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523256	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523258	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7941351	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7946431	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70800600-70850800	Weak transcription	Right Atrium	heart
2	chr11:70824000-70861600	Weak transcription	A549	lung
3	chr11:70827400-70851200	Weak transcription	Placenta	Placenta
4	chr11:70832200-70860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:70832200-70863600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:70841200-70857400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:70841800-70851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:70842400-70860600	Weak transcription	Fetal Intestine Large	intestine
10	chr11:70842600-70851000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:70842600-70860800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:70843200-70856800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:70843400-70857200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:70843800-70850000	Weak transcription	HSMM	muscle
15	chr11:70846000-70852800	Strong transcription	HepG2	liver
16	chr11:70847200-70850800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:70847200-70851800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:70847400-70849800	Weak transcription	Fetal Stomach	stomach
19	chr11:70847800-70850000	Weak transcription	Liver	Liver
20	chr11:70848000-70850800	Weak transcription	Stomach Mucosa	stomach
21	chr11:70848400-70852400	Strong transcription	Fetal Intestine Small	intestine
22	chr11:70848800-70852000	Enhancers	Brain Anterior Caudate	brain
23	chr11:70849000-70849800	Weak transcription	Pancreas	Pancrea
24	chr11:70849000-70850000	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr11:70849000-70850800	Weak transcription	Gastric	stomach
26	chr11:70849600-70849800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:70849600-70852200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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