Variant report

Variant	rs11232298
Chromosome Location	chr11:70863969-70863970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:70862325..70865050-chr11:70958475..70960987,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10751032	1.00[ASN][1000 genomes]
rs10897639	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10897640	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10897641	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10897642	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11232205	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232208	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232209	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11232210	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232214	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232217	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232226	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232227	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232230	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11232299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11232364	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12272719	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12276523	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12278819	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12280157	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281887	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12282261	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12286150	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12287456	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12289762	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12290770	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12293485	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12294761	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1336	0.84[AMR][1000 genomes]
rs57067273	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57989516	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58061852	0.84[AMR][1000 genomes]
rs59963161	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6591903	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7105616	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523256	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73523258	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7941351	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946431	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048123	chr11:70795222-71231382	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70832200-70864400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr11:70858200-70891000	Weak transcription	Gastric	stomach
3	chr11:70858600-70865400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:70860600-70864400	Weak transcription	Fetal Kidney	kidney
5	chr11:70862600-70864200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr11:70863000-70864000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:70863400-70864000	Flanking Active TSS	HepG2	liver
8	chr11:70863600-70864000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:70863600-70864000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:70863600-70864000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:70863600-70864000	Flanking Active TSS	Liver	Liver
12	chr11:70863600-70864000	Enhancers	Brain Substantia Nigra	brain
13	chr11:70863600-70864000	Flanking Active TSS	Duodenum Mucosa	Duodenum
14	chr11:70863600-70864000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr11:70863600-70864000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr11:70863600-70864000	Enhancers	HSMM	muscle
17	chr11:70863600-70864200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:70863600-70864200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
19	chr11:70863600-70864200	Bivalent/Poised TSS	NHEK	skin
20	chr11:70863600-70864400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:70863600-70864400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr11:70863600-70864400	Bivalent Enhancer	Fetal Muscle Leg	muscle
23	chr11:70863600-70864600	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr11:70863600-70864600	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:70863600-70864600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:70863600-70864600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:70863600-70864600	Flanking Active TSS	Fetal Intestine Small	intestine
28	chr11:70863600-70864600	Bivalent Enhancer	Fetal Stomach	stomach
29	chr11:70863600-70864600	Flanking Active TSS	A549	lung
30	chr11:70863600-70864600	Enhancers	HMEC	breast
31	chr11:70863600-70864800	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr11:70863600-70864800	Flanking Active TSS	Hela-S3	cervix
33	chr11:70863600-70865600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:70863600-70865600	Enhancers	Placenta	Placenta
35	chr11:70863800-70864000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:70863800-70864000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr11:70863800-70864000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
38	chr11:70863800-70864000	Enhancers	HSMMtube	muscle
39	chr11:70863800-70864000	Flanking Active TSS	NHLF	lung
40	chr11:70863800-70864000	Flanking Active TSS	Osteobl	bone
41	chr11:70863800-70864200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
42	chr11:70863800-70864200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:70863800-70864200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:70863800-70864200	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr11:70863800-70864200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
46	chr11:70863800-70864200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:70863800-70864200	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr11:70863800-70864400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:70863800-70864400	Active TSS	Brain Angular Gyrus	brain
50	chr11:70863800-70864400	Active TSS	Brain Anterior Caudate	brain

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