Variant report

Variant	rs569983833
Chromosome Location	chr5:112911265-112911266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:112910971..112913788-chr5:112914677..112918901,4	K562	blood:

Variant related genes	Relation type
ENSG00000047188	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882721	chr5:112859994-112963488	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv882724	chr5:112868878-112933202	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv1033202	chr5:112891857-112945992	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
4	nsv520674	chr5:112911165-112942820	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112867400-112926000	Weak transcription	Small Intestine	intestine
2	chr5:112867400-112933000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:112868600-112911400	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr5:112870200-112930800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr5:112872000-112915000	Weak transcription	Hela-S3	cervix
6	chr5:112876000-112918800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:112889400-112930600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:112890600-112915800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:112891600-112912600	Weak transcription	Stomach Mucosa	stomach
10	chr5:112892800-112915000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr5:112894400-112911800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:112895000-112911400	Strong transcription	Dnd41	blood
13	chr5:112898200-112921200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr5:112899400-112929400	Weak transcription	HepG2	liver
15	chr5:112900400-112915800	Weak transcription	HUVEC	blood vessel
16	chr5:112901000-112911800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr5:112901400-112911600	Strong transcription	Adipose Nuclei	Adipose
18	chr5:112901800-112911400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:112902200-112911600	Strong transcription	Primary B cells from cord blood	blood
20	chr5:112903000-112917000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr5:112904400-112917200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr5:112904600-112934800	Weak transcription	Psoas Muscle	Psoas
23	chr5:112904800-112916200	Weak transcription	Fetal Heart	heart
24	chr5:112906400-112911400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr5:112906800-112911400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:112907200-112915600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr5:112907400-112915600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr5:112907400-112932000	Weak transcription	Rectal Smooth Muscle	rectum
29	chr5:112908400-112911400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr5:112908600-112911400	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr5:112908800-112911400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:112908800-112916000	Weak transcription	Fetal Brain Male	brain
33	chr5:112908800-112935200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr5:112909000-112911800	Strong transcription	Primary T cells from cord blood	blood
35	chr5:112909200-112911400	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr5:112909200-112912000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:112909400-112911400	Strong transcription	Fetal Muscle Leg	muscle
38	chr5:112909400-112911400	Strong transcription	Fetal Thymus	thymus
39	chr5:112909400-112912200	Strong transcription	Liver	Liver
40	chr5:112909600-112911600	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr5:112909600-112915600	Weak transcription	Fetal Kidney	kidney
42	chr5:112909800-112911400	Strong transcription	Stomach Smooth Muscle	stomach
43	chr5:112910000-112911800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
44	chr5:112910200-112915600	Weak transcription	NHLF	lung
45	chr5:112910400-112915600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr5:112910400-112917200	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:112910600-112912400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr5:112910600-112915200	Weak transcription	HSMM	muscle
49	chr5:112910600-112915200	Weak transcription	K562	blood
50	chr5:112910600-112915600	Weak transcription	Placenta	Placenta

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