Variant report

Variant	rs57002725
Chromosome Location	chr10:23160792-23160793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61566112	0.95[AFR][1000 genomes]
rs74121669	0.97[AFR][1000 genomes]
rs74121670	0.97[AFR][1000 genomes]
rs74121672	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23160200-23160800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr10:23160400-23160800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:23160400-23161600	Enhancers	Primary T cells from cord blood	blood
4	chr10:23160600-23160800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:23160600-23160800	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr10:23160600-23161000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr10:23160600-23161000	Enhancers	Brain Substantia Nigra	brain
8	chr10:23160600-23161200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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