Variant report

Variant	rs74121672
Chromosome Location	chr10:23183554-23183555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57002725	0.90[AFR][1000 genomes]
rs61566112	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121669	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121670	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121679	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23181600-23185000	Weak transcription	Gastric	stomach
2	chr10:23182200-23184400	Enhancers	Fetal Intestine Small	intestine
3	chr10:23182200-23184600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:23182200-23184600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:23182400-23183600	Enhancers	Fetal Intestine Large	intestine
6	chr10:23182600-23184400	Enhancers	Brain Hippocampus Middle	brain
7	chr10:23182800-23184600	Enhancers	K562	blood
8	chr10:23183000-23184000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:23183000-23184400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:23183200-23184000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:23183400-23184000	Enhancers	Placenta Amnion	Placenta Amnion
12	chr10:23183400-23184200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:23183400-23184400	Enhancers	Brain Anterior Caudate	brain
14	chr10:23183400-23184400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:23183400-23184400	Enhancers	Brain Substantia Nigra	brain
16	chr10:23183400-23184400	Enhancers	Placenta	Placenta
17	chr10:23183400-23184400	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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