Variant report

Variant	rs57009561
Chromosome Location	chr22:32185279-32185280
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32170492-32188129..22:33178968-33185617	Hela-S3	cervix:
2	22:31936958-31958600..22:32170492-32188129	GM12878	blood:
3	22:32170492-32188129..22:32284948-32287956	Hela-S3	cervix:
4	22:32170492-32188129..22:32347255-32351014	K562	blood:
5	chr22:31884462..31886140-chr22:32183447..32185554,2	MCF-7	breast:
6	22:32170492-32188129..22:32846948-32860159	K562	blood:

Variant related genes	Relation type
ENSG00000214093	Chromatin interaction
ENSG00000184459	Chromatin interaction
ENSG00000229673	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000227813	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000238910	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11913714	1.00[EUR][1000 genomes]
rs16985114	1.00[EUR][1000 genomes]
rs16985215	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16989356	1.00[EUR][1000 genomes]
rs16989522	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16989532	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16989535	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16989537	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35027698	1.00[EUR][1000 genomes]
rs4296524	1.00[EUR][1000 genomes]
rs57907329	1.00[EUR][1000 genomes]
rs7284098	1.00[EUR][1000 genomes]
rs8141241	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32150800-32212800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr22:32151000-32210800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr22:32151400-32217400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr22:32152400-32187000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr22:32153400-32187000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr22:32154000-32188600	Strong transcription	Fetal Muscle Trunk	muscle
7	chr22:32154400-32188200	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr22:32159600-32186600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr22:32159600-32207600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr22:32163200-32185400	Weak transcription	Fetal Heart	heart
11	chr22:32164600-32196000	Weak transcription	Hela-S3	cervix
12	chr22:32165000-32197600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr22:32171200-32195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr22:32171200-32204200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr22:32172000-32186000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr22:32172800-32221000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr22:32175200-32213800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr22:32175400-32193400	Weak transcription	HSMMtube	muscle
20	chr22:32175800-32202000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr22:32176000-32192400	Weak transcription	Fetal Kidney	kidney
22	chr22:32176000-32194600	Weak transcription	Fetal Brain Male	brain
23	chr22:32176000-32198600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr22:32176600-32193600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr22:32176800-32193800	Weak transcription	HSMM	muscle
26	chr22:32176800-32196200	Weak transcription	NHLF	lung
27	chr22:32176800-32198800	Weak transcription	A549	lung
28	chr22:32176800-32200000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr22:32177000-32190600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr22:32177000-32193200	Weak transcription	Esophagus	oesophagus
31	chr22:32177000-32193200	Weak transcription	Right Ventricle	heart
32	chr22:32177000-32193600	Weak transcription	Pancreas	Pancrea
33	chr22:32177000-32194600	Weak transcription	Colonic Mucosa	Colon
34	chr22:32178200-32199600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr22:32178800-32189800	Weak transcription	HUVEC	blood vessel
36	chr22:32178800-32193000	Weak transcription	Colon Smooth Muscle	Colon
37	chr22:32179200-32193600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr22:32179400-32190600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr22:32179400-32193400	Weak transcription	Gastric	stomach
40	chr22:32179400-32193600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr22:32179400-32193600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr22:32179600-32185600	Weak transcription	Ovary	ovary
43	chr22:32179600-32193200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr22:32179600-32193200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr22:32179600-32193200	Weak transcription	Lung	lung
46	chr22:32179600-32193200	Weak transcription	Thymus	Thymus
47	chr22:32179600-32193200	Weak transcription	Spleen	Spleen
48	chr22:32179600-32193400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr22:32179600-32193400	Weak transcription	Small Intestine	intestine
50	chr22:32179600-32193600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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