Variant report

Variant	rs16989535
Chromosome Location	chr22:32229931-32229932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32150875-32154575..22:32228866-32235273	GM12878	blood:
2	22:31936958-31958600..22:32228866-32235273	K562	blood:

Variant related genes	Relation type
ENSG00000214093	Chromatin interaction
ENSG00000242251	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11912177	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11913402	1.00[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11913714	1.00[EUR][1000 genomes]
rs12158709	1.00[MEX][hapmap]
rs12158711	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs16985114	1.00[EUR][1000 genomes]
rs16985215	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989356	1.00[EUR][1000 genomes]
rs16989498	0.84[LWK][hapmap];0.90[MKK][hapmap]
rs16989522	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989532	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989537	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989587	1.00[ASW][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs16989657	1.00[AMR][1000 genomes]
rs35027698	1.00[EUR][1000 genomes]
rs41496947	1.00[TSI][hapmap]
rs4296524	1.00[EUR][1000 genomes]
rs56945140	1.00[AMR][1000 genomes]
rs57009561	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57907329	1.00[EUR][1000 genomes]
rs59129341	1.00[AMR][1000 genomes]
rs7284098	1.00[EUR][1000 genomes]
rs8141241	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs917207	0.84[LWK][hapmap];0.90[MKK][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr22:32192400-32242200	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
5	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr22:32193200-32246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
10	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr22:32207800-32244000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr22:32209000-32245800	Strong transcription	Primary T cells from cord blood	blood
13	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr22:32210600-32251000	Strong transcription	Fetal Stomach	stomach
15	chr22:32216000-32239200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr22:32218200-32242200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr22:32218600-32241200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr22:32218800-32241000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr22:32218800-32247200	Weak transcription	Psoas Muscle	Psoas
20	chr22:32219000-32240200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr22:32219200-32231800	Weak transcription	Colonic Mucosa	Colon
22	chr22:32219200-32232000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr22:32219200-32243800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr22:32219600-32231400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr22:32219600-32233400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr22:32220000-32231800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr22:32220000-32239600	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr22:32220000-32240400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr22:32220200-32234400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr22:32220200-32241000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr22:32220400-32240800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr22:32221000-32241800	Strong transcription	Primary B cells from peripheral blood	blood
33	chr22:32221400-32254600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr22:32222000-32230000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr22:32222000-32240800	Weak transcription	Small Intestine	intestine
36	chr22:32222600-32232600	Weak transcription	Brain Anterior Caudate	brain
37	chr22:32223200-32236400	Weak transcription	Brain Angular Gyrus	brain
38	chr22:32223200-32242800	Weak transcription	Fetal Brain Male	brain
39	chr22:32223400-32232600	Weak transcription	Brain Substantia Nigra	brain
40	chr22:32223400-32234400	Weak transcription	Fetal Kidney	kidney
41	chr22:32223400-32236400	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr22:32224000-32231000	Weak transcription	Lung	lung
43	chr22:32225200-32231600	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr22:32225200-32231600	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr22:32225200-32232400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr22:32225200-32232600	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr22:32225400-32232600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr22:32225600-32235400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr22:32226200-32230000	Weak transcription	Colon Smooth Muscle	Colon
50	chr22:32226200-32231400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links