Variant report

Variant	rs59129341
Chromosome Location	chr22:32321260-32321261
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11912177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11913402	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12166668	1.00[EUR][1000 genomes]
rs16985215	1.00[AMR][1000 genomes]
rs16989522	1.00[AMR][1000 genomes]
rs16989532	1.00[AMR][1000 genomes]
rs16989535	1.00[AMR][1000 genomes]
rs16989537	1.00[AMR][1000 genomes]
rs16989587	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16989657	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56945140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428046	chr22:32316302-32356963	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32302000-32324800	Weak transcription	Fetal Thymus	thymus
2	chr22:32302400-32322600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr22:32304400-32339600	Weak transcription	Brain Germinal Matrix	brain
4	chr22:32305200-32321600	Weak transcription	Fetal Brain Female	brain
5	chr22:32313400-32321400	Weak transcription	Pancreas	Pancrea
6	chr22:32315000-32324800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr22:32315200-32322200	Weak transcription	Brain Angular Gyrus	brain
8	chr22:32316800-32321400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr22:32319000-32325200	Weak transcription	Brain Anterior Caudate	brain
10	chr22:32319600-32322000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:32319600-32324800	Weak transcription	K562	blood
12	chr22:32319600-32338000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr22:32320000-32325000	Weak transcription	Brain Hippocampus Middle	brain
14	chr22:32320200-32321400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr22:32320200-32322000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr22:32320400-32324800	Weak transcription	Fetal Muscle Leg	muscle
17	chr22:32321200-32323000	Enhancers	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links