Variant report

Variant	rs57016335
Chromosome Location	chr1:158299766-158299767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57145913	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57484198	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58654422	1.00[AMR][1000 genomes]
rs59443869	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665268	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025790	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025791	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025792	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025794	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027850	0.89[AFR][1000 genomes]
rs73027856	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158297000-158300200	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr1:158297000-158302000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr1:158297200-158300200	Active TSS	Thymus	Thymus
4	chr1:158298600-158303200	Enhancers	Primary T cells from cord blood	blood
5	chr1:158298800-158301000	Enhancers	Primary B cells from cord blood	blood
6	chr1:158298800-158301200	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:158299400-158300600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:158299600-158300800	Active TSS	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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