Variant report

Variant	rs59443869
Chromosome Location	chr1:158296878-158296879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57016335	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57145913	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57484198	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58654422	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6665268	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025790	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025791	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025792	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73025794	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73027850	0.91[AFR][1000 genomes]
rs73027856	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999542	chr1:158015715-158368132	Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv831692	chr1:158223459-158392016	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158293800-158298200	Weak transcription	Primary B cells from cord blood	blood
2	chr1:158295200-158297000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr1:158295800-158297000	Strong transcription	Dnd41	blood
4	chr1:158296800-158297200	Transcr. at gene 5' and 3'	Thymus	Thymus
5	chr1:158296800-158297600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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