Variant report

Variant	rs570272408
Chromosome Location	chr15:79237009-79237010
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:79235057..79237029-chr15:79295283..79298269,2	K562	blood:
2	chr15:79164120..79166260-chr15:79235714..79238649,3	K562	blood:
3	chr15:79228914..79232769-chr15:79235901..79239047,4	MCF-7	breast:
4	chr15:79222345..79225252-chr15:79235201..79237549,2	K562	blood:
5	chr15:79164120..79166028-chr15:79235714..79238649,2	K562	blood:
6	chr15:79224751..79228848-chr15:79235939..79238870,4	MCF-7	breast:
7	chr15:79219205..79223895-chr15:79234790..79239038,6	MCF-7	breast:
8	chr15:79229734..79233307-chr15:79235000..79238757,6	MCF-7	breast:
9	chr15:79228459..79231609-chr15:79232688..79237314,4	K562	blood:
10	chr15:79223240..79225058-chr15:79235224..79237418,3	MCF-7	breast:
11	chr15:79228950..79233188-chr15:79235013..79237607,6	K562	blood:
12	chr15:79236829..79239228-chr15:79240562..79242151,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000103811	Chromatin interaction
ENSG00000185787	Chromatin interaction
ENSG00000058335	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33573	chr15:79053484-79293881	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3428448	chr15:79236847-79239745	Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:79235400-79237600	Active TSS	Fetal Intestine Small	intestine
2	chr15:79235400-79237600	Active TSS	GM12878-XiMat	blood
3	chr15:79235400-79238000	Active TSS	Brain Hippocampus Middle	brain
4	chr15:79235600-79237600	Active TSS	Gastric	stomach
5	chr15:79236000-79237200	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr15:79236000-79237200	Flanking Active TSS	Liver	Liver
7	chr15:79236000-79237200	Flanking Active TSS	Duodenum Mucosa	Duodenum
8	chr15:79236000-79237800	Active TSS	Fetal Intestine Large	intestine
9	chr15:79236000-79237800	Active TSS	Fetal Kidney	kidney
10	chr15:79236200-79237400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:79236200-79237400	Flanking Active TSS	Spleen	Spleen
12	chr15:79236200-79237800	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr15:79236200-79237800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:79236200-79237800	Active TSS	Psoas Muscle	Psoas
15	chr15:79236200-79237800	Flanking Active TSS	Right Ventricle	heart
16	chr15:79236200-79237800	Bivalent/Poised TSS	Thymus	Thymus
17	chr15:79236200-79238000	Active TSS	Brain Angular Gyrus	brain
18	chr15:79236400-79237200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
19	chr15:79236400-79237200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
20	chr15:79236400-79237200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
21	chr15:79236400-79237200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:79236400-79237200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr15:79236400-79237200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
24	chr15:79236400-79237400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
25	chr15:79236400-79237400	Flanking Active TSS	Esophagus	oesophagus
26	chr15:79236400-79237400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
27	chr15:79236400-79237400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
28	chr15:79236400-79237600	Flanking Active TSS	Pancreas	Pancrea
29	chr15:79236400-79237600	Active TSS	Rectal Mucosa Donor 31	rectum
30	chr15:79236400-79237800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr15:79236400-79237800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
32	chr15:79236400-79237800	Active TSS	Brain Substantia Nigra	brain
33	chr15:79236400-79237800	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr15:79236400-79238000	Active TSS	H9 Cell Line	embryonic stem cell
35	chr15:79236400-79238000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr15:79236400-79238000	Bivalent Enhancer	Fetal Brain Male	brain
37	chr15:79236600-79237200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
38	chr15:79236600-79237200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr15:79236600-79237200	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr15:79236600-79237200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
41	chr15:79236600-79237200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
42	chr15:79236600-79237200	Flanking Active TSS	Ovary	ovary
43	chr15:79236600-79237200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
44	chr15:79236600-79237200	Bivalent/Poised TSS	HepG2	liver
45	chr15:79236600-79237400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
46	chr15:79236600-79237400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr15:79236600-79237400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
48	chr15:79236600-79237400	Flanking Active TSS	HMEC	breast
49	chr15:79236600-79237800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
50	chr15:79236600-79237800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell

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