Variant report

Variant	rs57033890
Chromosome Location	chr4:7033203-7033204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:7032371..7034026-chr4:7043413..7045660,2	MCF-7	breast:
2	chr4:7028159..7030542-chr4:7031515..7034056,3	K562	blood:
3	chr4:6989121..6990738-chr4:7030728..7033595,2	MCF-7	breast:
4	chr4:7025982..7029659-chr4:7032116..7035244,4	K562	blood:
5	chr4:7033122..7034926-chr4:7035026..7037064,2	MCF-7	breast:
6	chr4:7033087..7034844-chr4:7042709..7044617,2	K562	blood:
7	chr4:7024264..7027717-chr4:7032650..7036729,4	MCF-7	breast:
8	chr4:6988317..6990281-chr4:7032649..7036094,3	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC96-1	chr4:7032281-7035780	ENSG00000245748

No data

Variant related genes	Relation type
ENSG00000173013	Chromatin interaction
ENSG00000173011	Chromatin interaction
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73796376	1.00[AMR][1000 genomes]
rs73799034	1.00[AMR][1000 genomes]
rs73799038	1.00[AMR][1000 genomes]
rs73799052	1.00[AMR][1000 genomes]
rs7691106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv469847	chr4:7003525-7168441	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv878531	chr4:7006541-7129556	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv878532	chr4:7010504-7055603	Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv878533	chr4:7032180-7063524	Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6994000-7035600	Strong transcription	Fetal Stomach	stomach
2	chr4:6994000-7043200	Weak transcription	Right Atrium	heart
3	chr4:6994200-7035400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:6996000-7035200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr4:6996400-7034800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:7000600-7034400	Strong transcription	Dnd41	blood
7	chr4:7001400-7034600	Strong transcription	Primary T cells from cord blood	blood
8	chr4:7001600-7035200	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr4:7001600-7035400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr4:7001800-7035000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr4:7002000-7034400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:7002200-7035400	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr4:7002400-7034400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr4:7008200-7034600	Strong transcription	Fetal Brain Female	brain
15	chr4:7008200-7035200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr4:7008400-7035400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:7008400-7035400	Strong transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:7008800-7035000	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr4:7009800-7035200	Strong transcription	Fetal Intestine Large	intestine
20	chr4:7009800-7035600	Strong transcription	Duodenum Mucosa	Duodenum
21	chr4:7010000-7034600	Strong transcription	Adipose Nuclei	Adipose
22	chr4:7010800-7035000	Strong transcription	Esophagus	oesophagus
23	chr4:7011600-7036600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr4:7011600-7043600	Weak transcription	Psoas Muscle	Psoas
25	chr4:7013200-7044400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr4:7014400-7034400	Strong transcription	Fetal Thymus	thymus
27	chr4:7014600-7034600	Strong transcription	Thymus	Thymus
28	chr4:7016600-7034400	Strong transcription	Primary B cells from cord blood	blood
29	chr4:7018400-7043200	Weak transcription	Fetal Heart	heart
30	chr4:7018600-7035600	Strong transcription	Fetal Intestine Small	intestine
31	chr4:7020400-7035400	Strong transcription	Fetal Muscle Leg	muscle
32	chr4:7021400-7036200	Strong transcription	Fetal Muscle Trunk	muscle
33	chr4:7022000-7034600	Strong transcription	Primary T helper cells PMA-I stimulated	--
34	chr4:7022000-7034800	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr4:7022200-7035200	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr4:7022400-7034600	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:7022400-7034600	Strong transcription	Stomach Smooth Muscle	stomach
38	chr4:7022400-7035000	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr4:7022400-7035200	Strong transcription	Skeletal Muscle Female	skeletal muscle
40	chr4:7022600-7034400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr4:7022600-7035200	Strong transcription	Gastric	stomach
42	chr4:7023600-7034400	Strong transcription	Right Ventricle	heart
43	chr4:7023600-7035400	Strong transcription	Brain Germinal Matrix	brain
44	chr4:7024000-7035000	Strong transcription	Brain Cingulate Gyrus	brain
45	chr4:7024200-7034600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:7024200-7035600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr4:7024400-7035000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr4:7024400-7036200	Weak transcription	HSMM	muscle
49	chr4:7024600-7034400	Strong transcription	NHEK	skin
50	chr4:7024600-7035600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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