Variant report

Variant	rs73799034
Chromosome Location	chr4:6946170-6946171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:6916306..6918370-chr4:6943424..6946324,3	K562	blood:
2	chr4:6944446..6947031-chr4:6951567..6953686,2	K562	blood:
3	chr4:6917668..6920987-chr4:6945472..6948090,3	K562	blood:
4	chr4:6941810..6943426-chr4:6944150..6946769,2	K562	blood:
5	chr4:6909142..6912159-chr4:6946034..6948699,3	K562	blood:
6	chr4:6945003..6947109-chr4:6955850..6957643,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA0232-3	chr4:6945338-6947476	NONHSAT095027

No data

Variant related genes	Relation type
ENSG00000132405	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs57033890	1.00[AMR][1000 genomes]
rs73796376	1.00[AMR][1000 genomes]
rs73799038	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73799052	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878529	chr4:6883012-6983677	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv878530	chr4:6888932-7058473	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:6928000-6969600	Weak transcription	Aorta	Aorta
2	chr4:6934400-6946400	Enhancers	Placenta	Placenta
3	chr4:6939000-6946800	Enhancers	Adipose Nuclei	Adipose
4	chr4:6939200-6946200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:6939200-6947000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:6939200-6947200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:6939200-6948000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:6939600-6947000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:6940600-6946400	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:6941400-6946400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:6941400-6946400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:6941400-6947200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr4:6941600-6946800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr4:6941600-6947000	Enhancers	Placenta Amnion	Placenta Amnion
15	chr4:6941800-6947000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr4:6941800-6947000	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr4:6941800-6947800	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr4:6942000-6946600	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:6942000-6948000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr4:6942200-6947400	Enhancers	Fetal Intestine Large	intestine
21	chr4:6942400-6947000	Enhancers	Small Intestine	intestine
22	chr4:6942600-6946400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:6942600-6947000	Enhancers	Brain Anterior Caudate	brain
24	chr4:6943000-6946800	Enhancers	Liver	Liver
25	chr4:6943200-6946800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
26	chr4:6943200-6947000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:6943200-6947200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr4:6943400-6946600	Enhancers	Fetal Brain Male	brain
29	chr4:6943800-6955400	Weak transcription	Brain Substantia Nigra	brain
30	chr4:6944200-6947200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr4:6944400-6947000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr4:6944400-6949800	Weak transcription	Fetal Lung	lung
33	chr4:6944600-6946200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:6944600-6946200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:6944600-6946200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:6944600-6946400	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr4:6944600-6946800	Enhancers	NHDF-Ad	bronchial
38	chr4:6944600-6947000	Enhancers	A549	lung
39	chr4:6944600-6947200	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr4:6944600-6947800	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr4:6944800-6946200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:6944800-6946200	Enhancers	Primary T cells fromperipheralblood	blood
43	chr4:6944800-6946800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr4:6944800-6947400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
45	chr4:6944800-6955400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:6945000-6947200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr4:6945000-6949000	Genic enhancers	Fetal Intestine Small	intestine
48	chr4:6945000-6949600	Weak transcription	Fetal Kidney	kidney
49	chr4:6945000-6955400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr4:6945000-6970200	Weak transcription	Hela-S3	cervix

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