Variant report

Variant	rs57037569
Chromosome Location	chr9:110069262-110069263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110069222..110072456-chr9:110073619..110076462,3	MCF-7	breast:
2	chr9:110044300..110048942-chr9:110067094..110074281,11	MCF-7	breast:
3	chr9:110044689..110046322-chr9:110067933..110070602,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11573616	1.00[AMR][1000 genomes]
rs11573632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573658	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573690	0.92[AFR][1000 genomes]
rs11573699	1.00[AFR][1000 genomes]
rs16912374	1.00[AFR][1000 genomes]
rs4987204	1.00[AFR][1000 genomes]
rs55797242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58624985	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60543725	1.00[AFR][1000 genomes]
rs73515717	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515799	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517771	0.93[AFR][1000 genomes]
rs73517788	0.93[AFR][1000 genomes]
rs73517791	0.96[AFR][1000 genomes]
rs73517793	0.96[AFR][1000 genomes]
rs7850955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868125	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv519266	chr9:110049477-110085255	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110048800-110069600	Weak transcription	Fetal Brain Male	brain
2	chr9:110051600-110079200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:110057200-110079200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:110057400-110074600	Weak transcription	Spleen	Spleen
5	chr9:110057400-110074800	Weak transcription	Psoas Muscle	Psoas
6	chr9:110058600-110074800	Weak transcription	Right Atrium	heart
7	chr9:110058600-110098600	Weak transcription	Small Intestine	intestine
8	chr9:110060200-110070000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:110061400-110094600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:110061600-110073400	Strong transcription	K562	blood
11	chr9:110062000-110076000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:110062000-110078000	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr9:110062400-110077800	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr9:110062400-110078600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr9:110062600-110078800	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr9:110062800-110077600	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr9:110063000-110070600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:110063000-110073200	Strong transcription	GM12878-XiMat	blood
19	chr9:110063000-110077200	Strong transcription	A549	lung
20	chr9:110063000-110078200	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr9:110063000-110079200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:110063200-110069800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr9:110063200-110069800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:110063200-110077400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr9:110063200-110077400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr9:110063200-110077800	Strong transcription	Placenta	Placenta
27	chr9:110063400-110071800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr9:110063400-110077800	Strong transcription	Fetal Lung	lung
29	chr9:110063600-110070400	Strong transcription	NHEK	skin
30	chr9:110063600-110078600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr9:110063800-110073200	Strong transcription	NHLF	lung
32	chr9:110063800-110079200	Strong transcription	Osteobl	bone
33	chr9:110063800-110079400	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr9:110064000-110069600	Strong transcription	NHDF-Ad	bronchial
35	chr9:110064000-110070200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr9:110064000-110073000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:110064000-110074400	Strong transcription	HSMM	muscle
38	chr9:110064000-110074600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr9:110064000-110074600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr9:110064000-110085000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr9:110064200-110071800	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr9:110065200-110070400	Strong transcription	Primary T cells fromperipheralblood	blood
43	chr9:110065200-110089200	Strong transcription	Fetal Thymus	thymus
44	chr9:110065400-110071800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
45	chr9:110065400-110071800	Strong transcription	NH-A	brain
46	chr9:110065400-110077800	Strong transcription	Primary B cells from cord blood	blood
47	chr9:110065600-110071000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr9:110065600-110098600	Strong transcription	Dnd41	blood
49	chr9:110065800-110070400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr9:110065800-110071800	Strong transcription	H1 Cell Line	embryonic stem cell

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