Variant report

Variant	rs73515717
Chromosome Location	chr9:110047985-110047986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110044300..110048942-chr9:110067094..110074281,11	MCF-7	breast:
2	chr9:110045521..110048079-chr9:110251760..110253947,2	MCF-7	breast:
3	chr9:110045113..110046713-chr9:110046851..110048527,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction
ENSG00000136826	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11573616	1.00[AMR][1000 genomes]
rs11573632	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573658	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573690	0.87[AFR][1000 genomes]
rs11573699	0.96[AFR][1000 genomes]
rs16912374	0.96[AFR][1000 genomes]
rs4987204	0.96[AFR][1000 genomes]
rs55797242	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57037569	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58624985	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60543725	0.96[AFR][1000 genomes]
rs73515784	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515799	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517707	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517771	0.89[AFR][1000 genomes]
rs73517788	0.89[AFR][1000 genomes]
rs73517791	0.91[AFR][1000 genomes]
rs73517793	0.91[AFR][1000 genomes]
rs7850955	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7868125	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110044200-110048200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr9:110044400-110048000	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr9:110044400-110048200	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr9:110044400-110048200	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr9:110044400-110048400	Active TSS	Fetal Kidney	kidney
6	chr9:110044400-110048800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr9:110044600-110048000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:110044600-110048200	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr9:110044600-110048200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:110044600-110048200	Active TSS	A549	lung
11	chr9:110044600-110048400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:110044600-110048400	Active TSS	GM12878-XiMat	blood
13	chr9:110044600-110049000	Active TSS	Right Ventricle	heart
14	chr9:110044800-110048000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:110044800-110048000	Active TSS	Aorta	Aorta
16	chr9:110044800-110048200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:110044800-110048200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:110044800-110048200	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr9:110044800-110048200	Active TSS	Fetal Brain Female	brain
20	chr9:110044800-110048200	Active TSS	Fetal Lung	lung
21	chr9:110044800-110048400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:110044800-110048400	Active TSS	HUES6 Cell Line	embryonic stem cell
23	chr9:110044800-110048400	Active TSS	iPS-15b Cell Line	embryonic stem cell
24	chr9:110044800-110048400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:110044800-110048400	Active TSS	Left Ventricle	heart
26	chr9:110044800-110048400	Active TSS	K562	blood
27	chr9:110044800-110048600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
28	chr9:110044800-110048600	Active TSS	Ovary	ovary
29	chr9:110044800-110048800	Active TSS	Psoas Muscle	Psoas
30	chr9:110044800-110048800	Active TSS	HSMMtube	muscle
31	chr9:110045000-110048000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr9:110045000-110048000	Active TSS	Fetal Thymus	thymus
33	chr9:110045000-110048200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:110045000-110048200	Active TSS	Fetal Intestine Large	intestine
35	chr9:110045000-110048200	Active TSS	Placenta Amnion	Placenta Amnion
36	chr9:110045000-110048200	Active TSS	NH-A	brain
37	chr9:110045000-110048400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr9:110045000-110048400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr9:110045000-110048400	Active TSS	Fetal Muscle Leg	muscle
40	chr9:110045000-110048400	Active TSS	Placenta	Placenta
41	chr9:110045000-110048400	Active TSS	Fetal Stomach	stomach
42	chr9:110045000-110048400	Active TSS	HMEC	breast
43	chr9:110045000-110048400	Active TSS	NHDF-Ad	bronchial
44	chr9:110045000-110048600	Active TSS	Breast Myoepithelial Primary Cells	Breast
45	chr9:110045000-110048600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr9:110045000-110048600	Active TSS	HSMM	muscle
47	chr9:110045000-110050600	Active TSS	NHLF	lung
48	chr9:110045200-110048400	Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr9:110046200-110048000	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr9:110046200-110048600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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