Variant report
| Variant | rs57041302 |
|---|---|
| Chromosome Location | chr10:16201819-16201820 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11813598 | 1.00[EUR][1000 genomes] |
| rs11815171 | 1.00[EUR][1000 genomes] |
| rs11816194 | 1.00[EUR][1000 genomes] |
| rs17138404 | 1.00[EUR][1000 genomes] |
| rs4559583 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56786131 | 1.00[EUR][1000 genomes] |
| rs57156702 | 1.00[EUR][1000 genomes] |
| rs57870435 | 1.00[EUR][1000 genomes] |
| rs60578728 | 1.00[EUR][1000 genomes] |
| rs7094183 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73589703 | 1.00[EUR][1000 genomes] |
| rs73598849 | 1.00[EUR][1000 genomes] |
| rs73600965 | 1.00[EUR][1000 genomes] |
| rs73606976 | 1.00[EUR][1000 genomes] |
| rs73606983 | 1.00[EUR][1000 genomes] |
| rs73606989 | 1.00[EUR][1000 genomes] |
| rs73606991 | 1.00[EUR][1000 genomes] |
| rs73606993 | 1.00[EUR][1000 genomes] |
| rs73606994 | 1.00[EUR][1000 genomes] |
| rs7915627 | 1.00[EUR][1000 genomes] |
| rs7922370 | 1.00[EUR][1000 genomes] |
| rs7922899 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv894900 | chr10:15285306-16232093 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv530146 | chr10:15722937-16522747 | Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv1049806 | chr10:16065973-16228249 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:16201000-16203000 | Enhancers | Stomach Mucosa | stomach |
