Variant report

Variant	rs57050521
Chromosome Location	chr11:9511484-9511485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9510455..9512586-chr11:9513778..9516603,2	K562	blood:
2	chr11:9510653..9512629-chr11:9515570..9517732,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11042379	0.83[AFR][1000 genomes]
rs12274646	0.83[AFR][1000 genomes]
rs34972213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56080598	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58602953	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59113683	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59158354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59571955	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60482254	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73404392	1.00[AMR][1000 genomes]
rs73406261	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406268	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406269	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406283	0.87[AFR][1000 genomes]
rs73406286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406291	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73406301	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916534	chr11:9188436-9516241	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv1055078	chr11:9252857-9538877	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
4	nsv1039537	chr11:9455387-9535970	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv7670	chr11:9500895-9514750	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9483600-9518600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:9484600-9544800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:9485200-9520000	Weak transcription	Stomach Mucosa	stomach
4	chr11:9489600-9524000	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr11:9489800-9523400	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr11:9491400-9525400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:9491400-9551600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:9492000-9527200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:9492200-9525400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:9492800-9527800	Strong transcription	Fetal Stomach	stomach
11	chr11:9495600-9525400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:9496200-9520000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:9496200-9522600	Weak transcription	Fetal Heart	heart
14	chr11:9496600-9516000	Weak transcription	Fetal Brain Male	brain
15	chr11:9496600-9517000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:9496600-9528200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:9497400-9517400	Weak transcription	Small Intestine	intestine
18	chr11:9499200-9526000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:9500200-9516000	Weak transcription	Pancreas	Pancrea
20	chr11:9500400-9522600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:9500600-9519800	Weak transcription	A549	lung
22	chr11:9501400-9512400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr11:9501400-9522600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:9501600-9517400	Weak transcription	Esophagus	oesophagus
25	chr11:9501600-9519800	Weak transcription	Fetal Kidney	kidney
26	chr11:9501800-9511600	Weak transcription	Ovary	ovary
27	chr11:9501800-9515800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr11:9501800-9516000	Weak transcription	Brain Angular Gyrus	brain
29	chr11:9501800-9516000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr11:9501800-9517200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr11:9501800-9517200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:9501800-9534000	Weak transcription	Psoas Muscle	Psoas
33	chr11:9502200-9516000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr11:9502800-9517200	Weak transcription	Colonic Mucosa	Colon
35	chr11:9503000-9512200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:9503000-9512200	Weak transcription	Spleen	Spleen
37	chr11:9503000-9512400	Weak transcription	HepG2	liver
38	chr11:9503000-9515600	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:9503000-9516400	Weak transcription	Brain Substantia Nigra	brain
40	chr11:9503000-9517200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr11:9503000-9519600	Weak transcription	Gastric	stomach
42	chr11:9503000-9521000	Weak transcription	Aorta	Aorta
43	chr11:9503400-9512200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr11:9503800-9514000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:9504200-9513400	Strong transcription	Fetal Thymus	thymus
46	chr11:9504600-9513400	Strong transcription	Stomach Smooth Muscle	stomach
47	chr11:9505200-9525200	Strong transcription	Placenta	Placenta
48	chr11:9505600-9513000	Weak transcription	Right Ventricle	heart
49	chr11:9506000-9525200	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr11:9506800-9514000	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links