Variant report

Variant	rs570552866
Chromosome Location	chr9:72698944-72698945
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv949052	chr9:72698039-72741247	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72694800-72704400	Enhancers	Rectal Smooth Muscle	rectum
2	chr9:72694800-72708200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr9:72694800-72721400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:72695000-72700000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:72695400-72709200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr9:72695600-72701400	Enhancers	Colon Smooth Muscle	Colon
7	chr9:72696400-72699000	Weak transcription	Ovary	ovary
8	chr9:72696400-72701800	Weak transcription	Right Ventricle	heart
9	chr9:72696400-72706200	Weak transcription	Left Ventricle	heart
10	chr9:72696400-72706600	Weak transcription	Fetal Brain Female	brain
11	chr9:72696400-72708800	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:72696600-72701400	Weak transcription	Fetal Stomach	stomach
13	chr9:72696800-72700200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr9:72696800-72700400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:72696800-72701400	Weak transcription	Adipose Nuclei	Adipose
16	chr9:72696800-72705800	Weak transcription	HSMM	muscle
17	chr9:72697000-72700000	Weak transcription	HSMMtube	muscle
18	chr9:72697200-72699600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:72697600-72699200	Enhancers	HMEC	breast
20	chr9:72698000-72699000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr9:72698000-72699000	Enhancers	NHEK	skin
22	chr9:72698000-72699200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr9:72698200-72706000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr9:72698200-72708800	Weak transcription	Psoas Muscle	Psoas
25	chr9:72698400-72699000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:72698400-72699200	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr9:72698600-72699000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr9:72698600-72701400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:72698800-72711200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links