Variant report

Variant	rs570563035
Chromosome Location	chr1:223566370-223566371
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832670	chr1:223561771-223683381	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv4687	chr1:223565080-223610362	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223566000-223567000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
2	chr1:223566200-223566400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
3	chr1:223566200-223566400	Enhancers	Esophagus	oesophagus
4	chr1:223566200-223566600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:223566200-223566600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:223566200-223566600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr1:223566200-223566600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr1:223566200-223566600	Bivalent Enhancer	Stomach Smooth Muscle	stomach
9	chr1:223566200-223566800	Active TSS	Breast Myoepithelial Primary Cells	Breast
10	chr1:223566200-223566800	Bivalent Enhancer	Fetal Intestine Small	intestine
11	chr1:223566200-223567000	Bivalent Enhancer	Fetal Brain Male	brain
12	chr1:223566200-223567000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
13	chr1:223566200-223567200	Active TSS	Brain Anterior Caudate	brain
14	chr1:223566200-223567200	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
15	chr1:223566200-223567200	Bivalent/Poised TSS	NHEK	skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links