Variant report

Variant	rs57057768
Chromosome Location	chr8:107232701-107232702
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs73299560	1.00[AMR][1000 genomes]
rs73301404	1.00[AMR][1000 genomes]
rs73301486	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891263	chr8:107210629-107239780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107231000-107233800	Weak transcription	Aorta	Aorta
2	chr8:107231800-107233600	Weak transcription	NH-A	brain
3	chr8:107232000-107233600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:107232000-107233600	Weak transcription	NHLF	lung
5	chr8:107232000-107233800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:107232000-107234000	Weak transcription	HSMMtube	muscle
7	chr8:107232200-107233600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr8:107232200-107233600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:107232200-107233600	Weak transcription	NHDF-Ad	bronchial
10	chr8:107232200-107233600	Weak transcription	Osteobl	bone
11	chr8:107232400-107233600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:107232400-107233600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:107232400-107233600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:107232400-107233600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:107232600-107233800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:107232600-107233800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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