Variant report

Variant	rs73299560
Chromosome Location	chr8:107182054-107182055
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10107881	1.00[EUR][1000 genomes]
rs10283310	1.00[EUR][1000 genomes]
rs11993757	1.00[EUR][1000 genomes]
rs11994723	1.00[EUR][1000 genomes]
rs11996800	1.00[EUR][1000 genomes]
rs2345576	1.00[EUR][1000 genomes]
rs28699587	1.00[EUR][1000 genomes]
rs28765202	1.00[EUR][1000 genomes]
rs35718371	1.00[EUR][1000 genomes]
rs55946450	1.00[EUR][1000 genomes]
rs56191845	1.00[EUR][1000 genomes]
rs57057768	1.00[AMR][1000 genomes]
rs58312910	1.00[EUR][1000 genomes]
rs59229125	1.00[EUR][1000 genomes]
rs59854028	1.00[EUR][1000 genomes]
rs6986205	1.00[EUR][1000 genomes]
rs73299543	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73299569	1.00[EUR][1000 genomes]
rs73301404	1.00[AMR][1000 genomes]
rs73301406	1.00[EUR][1000 genomes]
rs73301486	1.00[AMR][1000 genomes]
rs73698639	1.00[EUR][1000 genomes]
rs73698689	1.00[EUR][1000 genomes]
rs73698690	1.00[EUR][1000 genomes]
rs7824769	1.00[EUR][1000 genomes]
rs7827776	1.00[EUR][1000 genomes]
rs7841705	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107180800-107182800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr8:107182000-107183000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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