Variant report
| Variant | rs55946450 |
|---|---|
| Chromosome Location | chr8:107223842-107223843 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10107881 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10283310 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11993757 | 1.00[EUR][1000 genomes] |
| rs11994723 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11996800 | 1.00[EUR][1000 genomes] |
| rs16874237 | 1.00[ASN][1000 genomes] |
| rs2345576 | 1.00[EUR][1000 genomes] |
| rs28699587 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28765202 | 1.00[EUR][1000 genomes] |
| rs35718371 | 1.00[EUR][1000 genomes] |
| rs56191845 | 1.00[EUR][1000 genomes] |
| rs57194187 | 1.00[ASN][1000 genomes] |
| rs58312910 | 1.00[EUR][1000 genomes] |
| rs59229125 | 1.00[EUR][1000 genomes] |
| rs59536759 | 1.00[ASN][1000 genomes] |
| rs59854028 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61105228 | 1.00[ASN][1000 genomes] |
| rs61553007 | 1.00[ASN][1000 genomes] |
| rs6986205 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7010241 | 1.00[ASN][1000 genomes] |
| rs73299543 | 1.00[EUR][1000 genomes] |
| rs73299560 | 1.00[EUR][1000 genomes] |
| rs73299569 | 1.00[EUR][1000 genomes] |
| rs73301406 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73698639 | 1.00[EUR][1000 genomes] |
| rs73698647 | 1.00[ASN][1000 genomes] |
| rs73698689 | 1.00[EUR][1000 genomes] |
| rs73698690 | 1.00[EUR][1000 genomes] |
| rs7818310 | 1.00[ASN][1000 genomes] |
| rs7824769 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7825348 | 1.00[ASN][1000 genomes] |
| rs7825353 | 1.00[ASN][1000 genomes] |
| rs7827776 | 1.00[EUR][1000 genomes] |
| rs7841705 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021369 | chr8:106493317-107243322 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv611840 | chr8:106913294-107265915 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv891263 | chr8:107210629-107239780 | Enhancers Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv397163 | chr8:107221704-107230062 | Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:107220600-107229200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
